LOC122357002


Basic Information

Item Value
gene id LOC122357002
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 4244608 ~ 4245790 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252408.1
gcgcgcgctcgctcACAGCGCCTCTCCAACGCTGACCAACTTACAAGATGAACTCAGCGCAGCCAACCTACAGTTGTAAAACAATGTACCCAAGCCAATACATACTTCAGAATAAAATTGAAgcacatttatacaaaaatagaaaaaatccTCCTGATCCTGGTGAGAAGAACGGTATGTATTATTTTACccaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatagacTGCTGACATTCCAAAACATTacatcattttacagtaaaaggGGAACATTGCTACTACAGCCCCTGAAGGCAGCCCAGCTGTCTACTTAGCAAACGGACACCAGACTGTTTTTCTCAGATTGCATAACATACACAGGAGGAGCAACCAAACAATTTCTTGAACTACAAACAGTTAAGCTATGCATTAAAGGTTCCACGGCTTGCGCGAATACCGCAAGGtgtgatgctgaaaacacaagcCGAGGAGAATAAAACCTCTCGCATTCTCGGAACTGCAAACACTCATCACTACACAAACGTTACCCCGCAgttaaatgaatgtaataaactttatttgaataaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko00564 Glycerophospholipid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252408.1 True 589 lncRNA 0.41 2 4244608 4245790

Neighbor

gene id symbol gene type direction distance location
trnai-uau_4 NA coding upstream 172709 4071806 ~ 4071899 (+)
LOC122356299 eml4,LOC107586470 coding upstream 295653 3881586 ~ 3948955 (+)
ubr2 ubr2,LOC107669566,LOC107696377 coding upstream 485473 3729913 ~ 3759135 (+)
si:ch73-193i2.2 LOC107728794,LOC107590009,LOC107696375,LOC107739482 coding upstream 515140 3717296 ~ 3729468 (+)
LOC122356793 LOC107669554,LOC107696371,LOC107578696 coding upstream 527314 3713833 ~ 3717294 (+)
plekhh2 LOC107678558,LOC107707149,LOC107699295,LOC107586497,LOC107590017,LOC107727353 coding downstream 79848 4325638 ~ 4348853 (+)
LOC122356796 NA coding downstream 114745 4360535 ~ 4362542 (+)
si:ch73-105b23.6 LOC107586506,LOC107727362,LOC107699285,LOC107756817,LOC107678514 coding downstream 118233 4364023 ~ 4373553 (+)
LOC122356983 LOC107727362,LOC107586506,LOC107699285,LOC107678514,LOC107590018,LOC107756817 coding downstream 127424 4373214 ~ 4377830 (+)
calm2a calm1,LOC107396020,LOC102778633,LOC102293206 coding downstream 141391 4387181 ~ 4391197 (+)
LOC122356176 NA non-coding upstream 102106 4137317 ~ 4142502 (+)
G90650 NA non-coding upstream 139137 4105247 ~ 4105471 (+)
G90646 LOC107707147,LOC108422651 non-coding upstream 181829 4057260 ~ 4062779 (+)
G90573 NA non-coding upstream 194996 3952600 ~ 4049612 (+)
G90579 LOC107586473,LOC107758132,LOC107666233 non-coding upstream 231492 3992508 ~ 4013116 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding downstream 213849 4459639 ~ 4465868 (+)
G90700 NA non-coding downstream 225275 4471065 ~ 4471744 (+)
G90888 NA non-coding downstream 718912 4964702 ~ 4965015 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding downstream 757620 5003410 ~ 5013662 (+)
G90905 NA non-coding downstream 789569 5035359 ~ 5036116 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 412058 3809053 ~ 3832550 (+)
prkn park2,LOC107739476,LOC107669573,LOC107696378 other upstream 530845 3620406 ~ 3713763 (+)
G90377 NA other upstream 794591 3449401 ~ 3450017 (+)
G90348 dnph1 other upstream 963611 3277837 ~ 3280997 (+)
G90343 ppp2r5d,LOC107696374,LOC107559765 other upstream 970236 3271325 ~ 3274372 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other downstream 315858 4561648 ~ 4695842 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other downstream 746363 4992153 ~ 4997991 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other downstream 931928 5177718 ~ 5198404 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 1015246 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 1705427 5951217 ~ 5952517 (+)

Expression


Co-expression Network