LOC122357062


Basic Information

Item Value
gene id LOC122357062
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10753233 ~ 10763691 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006252420.1
GTGAATCGTCTGCATCGGTTTTTCAAAACGAAAGAACAGAATATTCATAGTTATATCGTTCGCATGTCAGCAAAGAAGCAGTTCTACAGCGCTTGCAGCTTGTGAACGAACACGACCTGGTTTTGAGGAATTCTCCATTTCcctataaaatgaaaattcatctAGAATTACATCTTATGTCATCattatgtttattaagcgtgGATGATGTATATGAACAGCGCTGGCTTGCCGCTGAGTGCTTAATGATGCATAAGATTAAGCCGAGGCTCTCAGCTGTGCTGTGACTCCCCTCTGGTTCCCATGCTGCAGTAGCATGCTGGGAGAACAAGCTCCAAACGGCCATCAGgtcATGGAATGCGGCGGAAATTCCAAGCGTGTCACGCAGGACCAATTTGTAGCCGCTTCTGGGGATGAACCGATATTTTCCACAAGGTTTATTCCATAATAAGACAAAGCTGGGTCCTGGCTCGAGTGGAATTTCTTTATGTATTTCTGATTATTGCCTGGCCAGCGGTGGGCCGGGCGGACTGTGATAAAAACCAGCCAAGCTGATTAATAGGAACATCATAAGAATATTACCGATAGCACCTCATCTTATATCTGTGTGTAATTTAGTCTGTCTTTCTGGACATGCCCATGTAATTATGAGCAGCGGCTCGAGCAAGGTGGAACGTGCTAAGGCACCGAAACAGACTTAAGGAAGCATCTTAATTTCCAACCTAGTGAAAGCCACCGCTGAACGGCATATTCGAAGCACCCCATAAAAGTGAAAAGCAAGTGATGAATGGCTTGTGCCAGCGTGTGCCGCTTTCATACTTTCCCCTGCTCTAAAGTGTACGCCACTTTGAGACATCTGATACAGAAGAAGCTCCCCAGACTCTGTTTGTGAATGTCTTTCATCAAACTTGCATATGAGAGCAGCCACGTGCTACATAGGCTCTTAGCCACACGCTTTGCCTCCTCTGATGGTCCGGCCAACCAATCCATCTTCCTGAGTGCTCCCACAGATGAGAAGTGGGCACTAGGCGCTTTCGTCGCTGAGCTACAGCAGGAGATGAATTGGAGTGCCATAGCCCACCTCCAGACTGTCCCAGTATAGCAATCTGGACCCCAGCGCTGTGCAGCGAGGGACGGTCTCATCCACTCAGAGAGGAAGCAGACTCACCCGGCCCCAGGAGGCCCGGGAAGCGCGGAGGCGGCCAGAACGCTGCCTGCTGGGGCCTTCCACCCATTCACACGGGCAGACCACGGGAGATGAAGCGGACACATGGATCTCGAGGCTACTGCAAGATGCTTTGATTGTTGTCCTGCTGACGATATCTGACTATGTCCTGAAGTGAAAGATGACAGAAGTTGCATCGACAACATTGATCTGAAAGTCAAAGCGTTTCGTCTGTCGTCCCACTGTGAAcatccaaaaaatatttcaaagacaGACTGCGGAGCCATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006252420.1 True 1456 lncRNA 0.48 3 10753233 10763691

Neighbor

gene id symbol gene type direction distance location
chst3a chst3a,LOC107708342,LOC107588701,LOC107673894,LOC107683746,LOC107585362,LOC107716304 coding upstream 63795 10681748 ~ 10689438 (+)
lrit2 lrit2,LOC107707486 coding upstream 84344 10663971 ~ 10668889 (+)
lrit1a lrit1a,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643,LOC108442250 coding upstream 89473 10659603 ~ 10663760 (+)
ogdhl ogdhl,LOC107683740,LOC107707496,LOC108442924,LOC108263326 coding upstream 119990 10613939 ~ 10633243 (+)
parga parg,LOC107716337,LOC107673942,LOC107585315,LOC107708050,LOC107683745 coding upstream 141742 10584381 ~ 10611491 (+)
pax2a pax2a,pax2,LOC101463634,LOC107707401,LOC107668824,LOC107588637,LOC107716343,LOC107585307 coding downstream 32391 10796082 ~ 10828360 (+)
cuedc2 cuedc2,LOC107585308,LOC107716345,LOC107673918,LOC107588639,LOC107707447 coding downstream 118228 10881919 ~ 10885510 (+)
dnajb12a dnajb12a,LOC107716349,LOC107668821,LOC107707369,LOC107673930,LOC107585300,LOC107588700,LOC108443064 coding downstream 151953 10915644 ~ 10919671 (+)
spock2 spock2,LOC107668819,LOC107673954 coding downstream 161243 10924934 ~ 10951268 (+)
pald1b pald1b,LOC107588630,LOC107707320,LOC107668836,LOC107716354,LOC107673876 coding downstream 205652 10969343 ~ 10981784 (+)
G92675 NA non-coding upstream 51130 10657508 ~ 10702103 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding upstream 107996 10642556 ~ 10645237 (+)
G92563 NA non-coding upstream 443457 10309237 ~ 10309776 (+)
G92552 NA non-coding upstream 477055 10275584 ~ 10276178 (+)
G92524 NA non-coding upstream 587577 10164559 ~ 10165656 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding downstream 57251 10820942 ~ 10947919 (+)
G92731 NA non-coding downstream 195729 10959420 ~ 10961696 (+)
G92746 NA non-coding downstream 219249 10982940 ~ 10983279 (+)
G92748 NA non-coding downstream 220547 10984238 ~ 10984645 (+)
LOC122356274 NA non-coding downstream 241219 11004910 ~ 11022056 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 332807 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 503508 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1318628 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1589119 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 1664112 9080848 ~ 9089121 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 201164 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 449835 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 491903 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 625694 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 807969 11571660 ~ 11592600 (+)

Expression


Co-expression Network