XLOC_006669 (pcgf6)


Basic Information

Item Value
gene id XLOC_006669
gene name pcgf6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28682614 ~ 28689717 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012870
TATACTGCGTCATCATCTGAGTATTGCGCGCACACCGTGAAGGTGCACAAGTGGATTGAAGTGTTTATTTCAAAACTTATCCCTGGAATAACTTTTCGCAATACGTGTTGAATGAAGTCGCCCAGCCGCTTCAGACAGACCGGGACGGCATCTGTAGTTGTTCTCCAGCAGTTGTTTTAGGGTTCACTTTCCGTTCTCTATGGACGAAACTGTGGACAGAGCGGTTGAGGAGCGGGAGGGATCCACGCGTTGGTCTGTTCGGTCTGGCGCTTACCTCAGCGGAGAGGACGAGACCCGCGACACTCACGGGGCTCCCAAACAACAAGCTGACGACGAGCCCTCCCTGCCACTTAGGGATTTCTATCCATATATTCGCTGTGCCCTTTGCAATGGATTTTTCATTGATGCCACCACCATTACAGAGTGTCTTCACACTTTTTGTAAGAGCTGCATTGTCAAGCACTTTTTCTACAGCAACAGGTGTCCGAACTGCTCTATTGTTGTACATCAGACACAACCACTCTACTGTATCAGACCTGACAGACAATTACAAGACATTGTTTTCAAGATGGTTCCATATTTGGAAGAAGATGAAAGGTCACGAATATGTGCATTTTATAGACTGAGAGGGCTTGAAGTTCCTAAACCAGTGGCATCACCGGCTGCATACCCAGTGAAACTGCCTCAGAGACAGAAGAAAGACCTGGTGCCTCAGTCTGTTTTTACTATTCCCTCAGAGCTGGATGTGTCTCTGATGTTGGAGTTTGTGGGAGCTGAGAAGGGTGTAGAGAACTATAAGCCACTTGAGAGGAAGTATGTGCGTGTGTCTGGGGAAGCTACTGTCCGTCACGTGGAGCTTTTTATCAGAAGGAAGATGGAGCTGAGTCAAAATTGCAAGgtTGATGTTGTGTGTGGAGAGCATATTCTCGAACAATACCAGTCTTTGAGAGAAATTTATAACACCATGGGTAAAAAGGCATTGCAGGATGGCATGCTGGTTCTGCATTTTGGACTCGTTCTGCCTACTCAGTAAAGAGAGATTACAAAAGACAAACTACGGTGATAAATACAGTCCGCAGTGCTATTTTGAgggctaaagtgacatttatcaTACCACAGTGAACCTATGCATTGAATTTTTGTCTTCCTGGTTGCCTTTTTTCAACAAATGCATTAAGAAACATCAGCACTGATGAATTATTTCAAGCaaatactgtttttaacactttccAAAGCTGTGAAGTTTCTGTAGatgctattttaaatgtttgcGCATGAACAACATTCATTATTTCATGCCTTATCTCAAAGAATGTTGTTTTTGCATATCAGTTAAGGGTAAAATGCATTGTGCCTTTAGATCCGCAGACAAATGGttcggttaaaaaaaaaatttcactgaAATATCTGTACATTATTTGAATTTTTATATTCCTATATGATTTTATTCTGCGCAAGAACAAAGGTGTTCTCTAGTTTCATTGCCTTTCTCTCCTTGACTCTTCTAGGGAGGTTTAATTGTTTCTGtctatttttctttgttcatttaaGATGAAAATGTTTGTACTACTTTATACTTGccatattgtgttgttttcagggCCTTCAGtgggaaaaaaagtattttgaaatgttttttttaaacatctttacaaataaatgtaaatctgtGCATGGCCAATCAGATCACATTGCATAACAATACAATGCAAATATTCCAGTCA
>TCONS_00012871
TTTCATCCTTTTTTTTCTAGACCTGACAGACAATTACAAGACATTGTTTTCAAGATGGTTCCATATTTGGAAGAAGATGAAAGGTCACGAATATGTGCATTTTATAGACTGAGAGGGCTTGAAGTTCCTAAACCAGTGGCATCACCGGCTGCATACCCAGTGAAACTGCCTCAGAGACAGAAGAAAGACCTGGTGCCTCAGTCTGTTTTTACTATTCCCTCAGAGCTGGATGTGTCTCTGATGTTGGAGTTTGTGGGGTTAGTTATGTTGACTGTAGTTAAGCACATGCGTCAAAGAAATTTTGGATTCTGCATCAAATTAAACGTACAATAttgatattatatatacataaaaaaagcatatacaaggcatttaaaatgtgtatactatatatgcatatataatgtCTAATgcttgaaaaataacatttttttctttaacccTAATATAATTAAATTCCAGTTATTTTTAGACTGTTGAGGTGATGCAAG

Function

symbol description
pcgf6 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of PRC1 complex. Is expressed in gonad; nervous system; and pharyngeal arch. Orthologous to human PCGF6 (polycomb group ring finger 6).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0031519 PcG protein complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04550 Signaling pathways regulating pluripotency of stem cells
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-060526-178 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of PRC1 complex. Is expressed in gonad; nervous system; and pharyngeal arch. Orthologous to human PCGF6 (polycomb group ring finger 6).

Ensembl:

ensembl_id ENSDARG00000069681

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012870 False 1724 mRNA 0.41 10 28682614 28689717
TCONS_00012871 True 491 mRNA 0.35 3 28687397 28688104

Neighbor

gene id symbol gene type direction distance location
XLOC_006667 nt5c2a coding downstream 8192 28634862 ~ 28674422 (-)
XLOC_006666 cyp17a1 coding downstream 71649 28601195 ~ 28610965 (-)
XLOC_006665 NA coding downstream 110150 28546412 ~ 28572464 (-)
XLOC_006664 NA coding downstream 169267 28497802 ~ 28513347 (-)
XLOC_006663 NA coding downstream 237796 28427477 ~ 28444818 (-)
XLOC_006670 NA coding upstream 54081 28743798 ~ 28746577 (-)
XLOC_006671 NA coding upstream 137576 28827293 ~ 28849894 (-)
XLOC_006672 NA coding upstream 535275 29224992 ~ 29229935 (-)
XLOC_006673 C13H10orf53 coding upstream 714501 29404218 ~ 29406534 (-)
XLOC_006674 chata coding upstream 717097 29406814 ~ 29421331 (-)
XLOC_006471 BX537274.2 misc downstream 18417709 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 27856389 825904 ~ 826225 (-)
XLOC_006661 BX950184.1 non-coding downstream 265456 28276898 ~ 28417158 (-)
XLOC_006658 CR392046.1 non-coding downstream 503064 28179434 ~ 28179550 (-)
XLOC_006678 NA non-coding upstream 816896 29506613 ~ 29701941 (-)
XLOC_006679 NA non-coding upstream 1019628 29709345 ~ 29803009 (-)

Expression


Co-expression Network