XLOC_006670


Basic Information

Item Value
gene id XLOC_006670
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28743798 ~ 28746577 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013814
ATTTTCATTATAAAAACTATCCCTTCgactatattttaaaataacttaaaagttGGAACTTGCAGCAAATCATTCGTTAAATAAATCCATTTATTACATATGTAAACATCTTactacacacactgtaaataatgcagggttccacacaattcattcatgtagtcccaacacaaatcaattaacttAACACTTACAACAAATGTATATGGATTAAACATATAAATTAAGttatcccaatgaaatctcaagaattgttgtttcagctcattttaattaagtcgtttgaacaagcaaaaacaaTTTAGTGCCTGAAGAAAAAAAGCATTACGTCATTTACAAATGCATCTTTAATGCCATATAAATAGGAACAATCTTCAATAATATAATAGGCATATTTAATagctacatttttgaaaaagtgaaGATCTAAAACTCCATAATAAGACCAACAACAGCTGAAGATGTTAGTTCACGTATGTTGTTCcccttttaatatttaaagtaattCATGTGAAAGGCCAATTTAAATAATTTCCCAATTGTTCCTGTTGACTTCCCTTAAACAGTTGagttctgtaaaaaaataaataaattcttccTGGTGGCCTTTGATCGATCATGTCCGGTTGTCAAACACAACTCAGACACCAAAGTACAACAAGAACACTTTACTATTTGTAGAGGGATTTTGCATTGTCAATAATGGTCCAGTATTGACTTTCTAGCTCTTCAATTACTTCTTATCAGAAATCCAGCAATATTAGAATTTCTCATGTACTTGTCTCGTGTATGTACATGTTTAACCTACAAACCAGACATGACAgctgtgaaaatgtgttttattggTACCATACATCAATTGTCAATGGCAGACACTATAggcaaaaatatatttgtaaaacaaCCACAAACAAATGGGCTCTGAAAACACAGAAAGAGCACACCTTATTTATGGCTGACTTGAAAAATGAACCTAAAACAACACTGTATTTTAGTGACAGATTTGAGGAAAGTGAACTGAAGATCTGTACGCCGCAGAATGGCTCTAgctcaggcatgtccaaactcggtcctggagggccggtgtcctgcatagtttagtttcaacttccttcaacacgcctgcctggaagttttagtatacctagaaagagcttgattagctggttcaggtgtgtttaattggagttataactaaaatatgcaagacaccagccctccaggactgagtttgggcaacCCTGGGCTAGCTAGTTTAGCCACCAACCCTTTTCTATACAAGCCAATATACGCTTAACACCAGAGTGCCACCTGGTGTTCACTGTAACCTTCTAGGTTTGATTATTTTTGCATTATCCAACATTTAATAAGAACTCTTATGGACTGATTCAATGACTTGTATATCATCTTAGGTTAATGAAATAACATAGAAAGTGAAATAATGTACAAAGGCAACATCAAATACACAGCAACATGTATCGTCTTGATATATAATGCAATGgcaaagactttaaaaaaataaatacattgtacatTGACTTAAAAACTATAATCTACCTTCTTAGCTGAAAGGTAGTTGTACCTTTAATGCGTCTAGAAACGATTTGAAATGAGACAAAGTTTTACTTTTGACTGGGTCTACACAAAAGGCGTTGAAGCTTGAGGCCTGTTCTTTTCAATGGATTTTCAAGAAATGAAATGTTGATAGCTACGGTCTCTGGACAAAATGTGCCACCAGACGTCGTGCTAACAGTGCAGGATGTAGATCCTACGAACAATGAGACTCTTACAGCTGCGATAGCTAATGTCTGACACATGCGCTTCCCAGACATACATGCTATGTTCACGTAATCTCATTTTTAAAGACGACAAAACAGAAACTGAAAGACAGAAAGGTGTAAAGCTTGGAGCAAAGTAGCATCTACTTactttacagtaataataataacagtaacgATACAAAATTTGCTATTTTACACTGAGATTGACAGAGTTTTCCAGTTAAAGATTatcaatttttttgttgtttttaataaaaacaaaattcatcATAATcgttttttaagaaaaatagaTCCAAAATACAGTGACAAGAGTGCAAAGGATATTTAGAGTTTTTGTTTGCTTGCTTATTTCTTTAGaaatagttataaaaaattaaaaaaagaacaggAAACCAATCCAaatgcaaacaataaaataaaaaaaactaaccaaAACCAAAATCAAACACTTCTTCTGAGTCTGGCGTGATGGTCAGGCAAGCTCTCAGCGACCATTGTGGGCATGGCCAAACTCAAGAATCTTTACACTTTTAATTAGATTTACTTAAAGGACTTTACGTAGTGGTTCTCAACTCCGGTCCTCAAGCTCTGGAACTGTACAGGTTTTTGTTCCAACCAGGTCCTACAAAACAAAtgattgagtttttaaaaaatggagCGGTTGGGGTTTGAATCTGAGGTGCACACAATAAACGGTGAGATAAAAAAAGTGATCCTTTCCTGTCAAGTGAGCACAACAGAAACGGCCATGCGTGTCAAA

Function

GO:

id name namespace
GO:0001522 pseudouridine synthesis biological_process
GO:0009451 RNA modification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013814 True 2544 lncRNA 0.35 2 28743798 28746577

Neighbor

gene id symbol gene type direction distance location
XLOC_006668 NA coding downstream 24568 28677121 ~ 28719230 (-)
XLOC_006669 pcgf6 coding downstream 54081 28682614 ~ 28689717 (-)
XLOC_006667 nt5c2a coding downstream 69376 28634862 ~ 28674422 (-)
XLOC_006666 cyp17a1 coding downstream 132833 28601195 ~ 28610965 (-)
XLOC_006665 NA coding downstream 171334 28546412 ~ 28572464 (-)
XLOC_006671 NA coding upstream 80716 28827293 ~ 28849894 (-)
XLOC_006672 NA coding upstream 478415 29224992 ~ 29229935 (-)
XLOC_006673 C13H10orf53 coding upstream 657641 29404218 ~ 29406534 (-)
XLOC_006674 chata coding upstream 660237 29406814 ~ 29421331 (-)
XLOC_006675 slc18a3a coding upstream 675472 29422049 ~ 29424454 (-)
XLOC_006471 BX537274.2 misc downstream 18478893 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 27917573 825904 ~ 826225 (-)
XLOC_006664 NA non-coding downstream 230451 28497802 ~ 28513347 (-)
XLOC_006663 NA non-coding downstream 298980 28427477 ~ 28444818 (-)
XLOC_006661 BX950184.1 non-coding downstream 326640 28276898 ~ 28417158 (-)
XLOC_006678 NA non-coding upstream 760036 29506613 ~ 29701941 (-)
XLOC_006679 NA non-coding upstream 962768 29709345 ~ 29803009 (-)
XLOC_006680 NA non-coding upstream 1190818 29937395 ~ 29942962 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G92584 LOC107588657,LOC107688297,LOC107707596,LOC107585322 non-coding NC_056711.1 CM032080.1 10331227 ~ 10333599 (-)