XLOC_006671


Basic Information

Item Value
gene id XLOC_006671
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 28827293 ~ 28849894 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013815
GTGCAGGGAGGGCAGGAGCAAAGCTGTGCTGTGGTGGGAGTGATGAGGGAGAGGGAACAGGCTCACTCCACTCTGCAGCTTCTAACAGAGGAGACCTGCACGACACAAATATGTCAATGCCATTGATGAGATGAACACAGCATGTTTACACTTGCTTACATAAAGGCTGCAACATTGCCAACTGCTACAGTACCATATTTTTGTATCCTGAATGAACTTTTTGGACTATAAAAGGCTTCTCTTCCTCGTCAGCAGTCACCTGTGTCTCCGCTGTGATGGACTCAGGGTGGACAGATCCGTTCTCAGTGGCGGCAGATTTCTCCTTCGGCGGGCTCACCTTGTCAGTGTGGACTGCAGCCTGAGAAACACAATAAATGG
>TCONS_00013816
AAGGAATGCAAGCTGAGCTCATCTCTTGTCAACGTGGCTGAGTCATCCTGCTCTCTCTCCAAACACTGTACAGCCTCAGAGAGTGTCAATGCCATTGATGAGATGAACACAGCATGTTTACACTTGCTTACATAAAGGCTGCAACATTGCCAACTGCTACAGTACCATATTTTTGTATCCTGAATGAACTTTTTGGACTATAAAAGGCTTCTCTTCCTCGTCAGCAGTCACCTGTGTCTCCGCTGTGATGGACTCAGGGTGGACAGATCCGTTCTCAGTGGCGGCAGATTTCTCCTTCGGCGGGCTCACCTTGTCAGTGTGGACTGCAGCCTGAGAAACACAATAAATGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013815 False 378 lncRNA 0.50 3 28827293 28848301
TCONS_00013816 True 350 lncRNA 0.48 3 28827293 28849894

Neighbor

gene id symbol gene type direction distance location
XLOC_006670 NA coding downstream 80716 28743798 ~ 28746577 (-)
XLOC_006668 NA coding downstream 108063 28677121 ~ 28719230 (-)
XLOC_006669 pcgf6 coding downstream 137576 28682614 ~ 28689717 (-)
XLOC_006667 nt5c2a coding downstream 152871 28634862 ~ 28674422 (-)
XLOC_006666 cyp17a1 coding downstream 216328 28601195 ~ 28610965 (-)
XLOC_006672 NA coding upstream 375098 29224992 ~ 29229935 (-)
XLOC_006673 C13H10orf53 coding upstream 554324 29404218 ~ 29406534 (-)
XLOC_006674 chata coding upstream 556920 29406814 ~ 29421331 (-)
XLOC_006675 slc18a3a coding upstream 572155 29422049 ~ 29424454 (-)
XLOC_006676 rgra coding upstream 596332 29446226 ~ 29455859 (-)
XLOC_006471 BX537274.2 misc downstream 18562388 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 28001068 825904 ~ 826225 (-)
XLOC_006665 NA non-coding downstream 254829 28546412 ~ 28572464 (-)
XLOC_006664 NA non-coding downstream 313946 28497802 ~ 28513347 (-)
XLOC_006663 NA non-coding downstream 382475 28427477 ~ 28444818 (-)
XLOC_006678 NA non-coding upstream 656719 29506613 ~ 29701941 (-)
XLOC_006679 NA non-coding upstream 859451 29709345 ~ 29803009 (-)
XLOC_006680 NA non-coding upstream 1087501 29937395 ~ 29942962 (-)
XLOC_006682 NA non-coding upstream 1134983 29984877 ~ 29985502 (-)

Expression


Co-expression Network