XLOC_006672


Basic Information

Item Value
gene id XLOC_006672
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29224992 ~ 29229935 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013817
GTTTTGTTAAACTAGgaaatataatttattgcataaaaattatatttagttaCAGTAAGAAGTCTAAacatttatgtacagtatttctTTACAgcattacatgaaaaaaaaaaacttttcttgtGTACTTTCTTTGATATAAAATAACATCtgaacatcaacaacaacaacaaaaaaaaaggttaagtTCGGCCATACTTGAGTTTCCATGAACAGCAACCACCATCCAGAGAAAAGCAAAGCCCATTCAGCTTCACGTGTAAAATGCTTGAAGGCGTTTTCTTGTAACATCGACCGACAGACAACATCTCAGAGCCGTTTAAAAGTCCGGAATCCATCAGGGAATTTCAAAGTCCGTTCACGCTCTTCATCCCGAAGAGAGTGAAAAATCCTCCAAACAAACTTGTTGTTCATCGTGAGTGCGCAAGCGACAGCCAAAAGCTTCCTAAACAAATGAGAAGGAACGATGTGGAGGTCATGGATCCCTGACCCGCAATTACAGTcgttttgtttgcatttattacGGCTGAGAAGCCTAAGAGGTCCAGTTTTCCCCCAGCTTAGTTACAGCAGTGATCAGAAGAGGGACGTTAATAAGATTCCCATTCCACGTACTTCATACACGAGACATCAAGACGTCCACAGATTCACTTGTTTCGTTGTGCACTTGCATAGTACTTTTAATGGGAAAGGAGGAACCACAGATATGATGAAGCCTGTTCATTCATAGACACTCAGTTGGCGCAAATAAGCTCCTGATTTTTAaattctctctctgtctcttgccacacacacacacaaacctgtttcatcacagacaaaaaaaaaggcTATTTTTCCCAAATGCAATGTTAATTATTTGCAAGGAAATTATTTTGCAAGGTCAGATTTGCAAAGTAAGAACAAAACTTTTAGGATTTTGTGCCTATCTCACAAGTAAGACTTATTTCTCAGAATTATTGACCTTATTATTAAAGTACGAGCGGGCGCAggcatttgaatctttttggcttgagacttccggtcttattcactttccttcatttttagacattaatgGTCCAGTGAAATTAGTGtcagttttttagtttttaaggATATCTATGAGCTAGTGTGGTACAAAACAATGACAACTTTTGCGTTTAGATAATATAAAACACATAGAAGTGTAaagcatgtaaagcttgtagtttgtcacttcagcCTAAATGGATAAACAATGGATCAAATCTTGGCCAATCAAACACTCTCTAGTatttgacatgccccgccccttcaagatgcttctcatttgcttttcatttgatgcacttgagctcaactacTCTCACTGGtggagctgtgataaaacaaaacaaaacaaaacactattggctgtttttttaatacAGGGAGGAGCTAtgctatgtcccaccctctctttgttTTTcagagattatgtcaaacatgtAATAAAAAAAGCTCTTCATGGGACCTTtgaaaacagcttgttttgctgcaAACTGACATTTTCCTATTGCATTATTCTCCTCTTTATGTCAGACAATAAGGCCAATATTGTATGTTTACAACTTGCAGTTTCAAGTAGTACAAATAGTTTTATAGGTATACAACTGTGAAAGATTTGCAAAATTAAGCAAATGTTGTTTTAGTAGTCGTACAAGTGATATATGTACAATATTTttcattgcattaaaaaaaattactcacaTTTTTGAGTTATAGCTTGCGAGGTAAACTCAATTTTGAGAAAAAACGGCAACaaattttttttgtctaaaatatGAATTCAGTATTGACAGTTAGGGtcacataattagatttttgttcTTAGAATTGCAGCTTTATTATCTTTTACTTGTTTCTGAGAAAGATTAATGTGAGAATCATCActaaaagttataaaaaataaagaaataaaaatacatatattttaaagttgCCATTCTGAGAACAAAAAACTTGTTATTTGTTACAGTGTTCAGTATAATTTAGTACacaccattttttattttttttactttttttactttaatttttaaatttctttaatgcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattattattattattattattaaattagtcaTTGCTGAAGCCAAATCGGGAGCTTATTAATtacacaaaataacttacgatagcggtccaaaaactagtacaccgaAAAGTATATGTTATagagaaatattaaatacaaatttaaaatgagaggaaaaatcaatatatatatattgtatagcttcctcttaaaaatatgaatttaaaagagaggattgtgaggggtgtactcataaatgctgagcactgtatatctcATAATATTCTGACCCTTGCATTCTCTCAACTTATTATAAACTTGCAATTATTTCCTCAGATTTGTATCTTTTGCTACCCACAAACTTCTACAAAATCCCACAAATTTGAAAAGTGTGCGAATTAAAGTCAAAATTCTGAGAATAAACATGTCAGAATTGCAAAATACAAACTCAAAATTCTGTCTGTATTTCTCAGAGTGTTTTTCTCCAGACTATTTTCTTCGAATTGGAAAATACAAAATTTTCCTTTTGTTTGTTGCCAGACGTTTTGAACACTTTACGAAGAAAAGgtcaagaaaaataaaagaaatggagCAACATCCGCTTCAAATGATTATTTGACTTCTGACAATAAGCGGTAGATGGCTTTCAGGCTTACTCAAGGGAAACCCATTAAAACCCGAAAGTCAAAACAGACAATAAAGAGCAAGTGGGTCATACTGCAATCAACAGAGCACTTACGCCACCTCTCAAGGCTACTATTTATAATTTAAACAGCACGACTGACTGGCATCAAACCCCAAAAAGGGCTTTCTGCCATCCACGCAATTTCATCCTATTTAATGCAGCGCAGCATATTTGCAGTACGCTTCGCTTTTTCCAAGGAGGATCAAAGCACATTTAACCTCAGCATAACATCCCAATTTCATCCTGTCTCAGTTTCGGTGACCAAAAAAAAGTCAGTTTTCACTTGTGCAGTACATCGAGACacttttaaaatgcatgtttatGCTGCAATCCTGTTTGGTGAGAAACATAATCAACAACGCAGCAGCAGTATTAAAAAATTAACCATGCAGAAGAGTGAAAAAACAATGATCCACAAATAGGGATAATAACTTGAAAAAAGTCCGTTCCCTATAGGAAACTAATATGAGTTTACCAGAAAGCTCTCCTGCATTAGAAATGAGCGATATATAAAAAAGAGAGGCTAATGGAGGTGCGATAAGAGAAAGTAATAAGAAAAGAATCCAGCAAAACAGATCGGTCCTCTGCTAACGAGAACACACAGATTCATTCCTGTATGCTTATTCAgaatacacacacagaaaataaTGCTTCAAACTAAAACTTTCCGAAGCATCGAGCTGAAATCAATATGAAGGCTGATTTTACTGCTGACTTTATTTCTCGCAGTTGTGAGTTTATAACTTCCAACACAATCTCGCAGCAATTTGAAACTTTTTGATGTAGTGGCTATTTTGTAggaattcgtatgatctcatttgtacaatttagtacgatttgcttaacCCCCAATGATGTGGTTGTTGCTATCAGATACAGTTGCGGCCGAatgttaacgagaattatttatattatttataaaatttcccatttattgtattttacgtctaccccaccccaaccctaaacccaaccatcacagtaatgtaaaacagtagttgtaccgagtattatttattttatttattaaattatccaatcaattttattttattaacgcctacccccaaccttaaacccaaccgtcatagtactgtaaatatattaactattgttatttattgttacaaaaattatgctatattgacgAGCGTATTCGCAGCTGCATacaatctagactttacccaatgatggttggatttaggggtggggttgggtgccacgcctcctttttaaaactgtacattttcatAAGAAATGAAAATAGTTACGTTTCATCATGAGATCAAGCTGTAACTTTGCATTATAAAATCGCAATTGCAAAAAAAGTTCAAATTGATTTAATTAACAATTGCTaaactgaaaaaatgtaaaatagttaagtTTCATCGTGAGACAATTGTTAACAGTTGttgaactgacaaaacgtaaaatagttacgtttcatTGTGAGATCAGACTGTCACTTCACATTACAAAATTGCAATTGCAAGAAAAAGTTCAAATTGATATAATTAACAAatgctaaactgacaaaacgtaaaatagtaaTGTTTCATCGTGAGACAATTGTTAACAATtgttaaactgacaaaacattaaatttttacgtttcctcgtgagatcaggctgtaactTCGAATGAGAATATTGCAATTGCAAGAAAAAGTTCAAGTTGAGATAAATAACAATtgttaaactgacaaaacgttaaaTATTTACGTTTCATCATGAGACAATTGTTAACAGACGATAAACtaataaaacgtaaaataatCACGTTTCATTATGACACAACTGTTAACAATTGTTAatctaataaaatgtaaaacagttgCGTTTCATCGTGAGACAATTGGTAACAATTGTTAAACTGATAAAGTAAAATAGCTATGTTTCATCACGAGATCAGGCTGTAACTTCACATTACAAAATCGCAATTGCAAGAAAAAGTTCAAATTAAGATAGATAACAATTGTGAATTAATCTCAACTTCAGCCTTTTCTCAGAATTTTGTCTCGCAATGTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013817 True 4821 lncRNA 0.33 2 29224992 29229935

Neighbor

gene id symbol gene type direction distance location
XLOC_006671 NA coding downstream 375098 28827293 ~ 28849894 (-)
XLOC_006670 NA coding downstream 478415 28743798 ~ 28746577 (-)
XLOC_006668 NA coding downstream 505762 28677121 ~ 28719230 (-)
XLOC_006669 pcgf6 coding downstream 535275 28682614 ~ 28689717 (-)
XLOC_006667 nt5c2a coding downstream 550570 28634862 ~ 28674422 (-)
XLOC_006673 C13H10orf53 coding upstream 174283 29404218 ~ 29406534 (-)
XLOC_006674 chata coding upstream 176879 29406814 ~ 29421331 (-)
XLOC_006675 slc18a3a coding upstream 192114 29422049 ~ 29424454 (-)
XLOC_006676 rgra coding upstream 216291 29446226 ~ 29455859 (-)
XLOC_006677 cdhr1a coding upstream 250075 29480010 ~ 29505946 (-)
XLOC_006471 BX537274.2 misc downstream 18960087 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 28398767 825904 ~ 826225 (-)
XLOC_006665 NA non-coding downstream 652528 28546412 ~ 28572464 (-)
XLOC_006664 NA non-coding downstream 711645 28497802 ~ 28513347 (-)
XLOC_006678 NA non-coding upstream 276678 29506613 ~ 29701941 (-)
XLOC_006679 NA non-coding upstream 479410 29709345 ~ 29803009 (-)
XLOC_006680 NA non-coding upstream 707460 29937395 ~ 29942962 (-)
XLOC_006682 NA non-coding upstream 754942 29984877 ~ 29985502 (-)
XLOC_006689 NA non-coding upstream 1015738 30245673 ~ 30250564 (-)

Expression


Co-expression Network