XLOC_006674 (chata)


Basic Information

Item Value
gene id XLOC_006674
gene name chata
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29406814 ~ 29421331 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012873
AGGGAACTGGGAAAAACTGTTAGTGAGTTTTCATCTTTCTTGACTGAACTCTTCAACTTTGAGGATGCCAGTTTCAAAAAGGGAACAATCAAAGGACACGGGAGATCCATGTGCTCTCCCGAAGCTCCCCATTCCCCCCTTGAAGCAAACACTGGACATGTACCTGACATGCATGGGTCACCTCGTCCCAGAGGACCAGTTCAGAAAGACCAAGGCCGTTGTAGAGAAATTTGGAGCACCTGGTGGAGTGGGGGAAACCCTTCAGAAAAAGTTACTGGAGAGAAGTGAACAAAAGGCCAATTGGGTGTATGATTATTGGCTTGAAGACATGTATTTGAACAACAGGTTAGCACTACCTGTCAACTCCAGTCCTGTTATGGTCTTTCACAAGCAGAACTTCAAGGGTCAAAGTGATGTCCTCAGatttgcTGCTAATCTCATTTCTGGTGTATTAGAGTATAAAGCTCTAATTGATGGACGTGCTCTCCCTGTAGAGCATGCTCGTGGGCAGTTGGCCGGGACGCCCCTGTGTATGGATCAGTACAACAAGGTCTTCACGTCCTACAGGCTGCCAGGAACAAAAACAGACACTTTAGTGGCTCAGAAGAGCACAGTTATGCCTGAACCCGAACATATAATAGTGGCATGTAAGAATCAGTTTTTTGTTCTAGACGTGATGGTAAACTTTCGCCGGCTGAATGAAAAAGACCTTTACACTCAGCTGGAGCGAATCAGAAAGATGGCAGACATCGAAGAGGAGCGTCAGCCTCCAATCGGCCTGCTCACATCAGATGGCAGAACACAGTGGGCCGAGGCTCGCAACATACTGATCAAAGATTCTACCAACAGGGACTCTCTGGACATGATTGAGCGCTGTTTGTGTCTGGTGTGTTTGGATGAGGAAActgccactgaactgaatgacAGCAACAGAGCTTTGCTAATGCTTCATGGAGGAGGAACGGACAAAAACGGGGGCAACCGATGGTACGACAAACCCATGCAGTTTGTAATAGGTGCTGATGGATGCTGTGGCGTCGTCTGTGAACACTCTCCTTTTGAGGGAATAGTGCTTGTGCAGTGTTCGGAGTATCTACTGAGATACATGAGAGGAAGCCCTTCTAAGCTGGTGAGAGCAGCCAGCATGAGTGAACTTCCAGCCCCCAGACGACTGCGCTGGAAATGCTCTCCAGACATCCAAACCTTCCTCTCAGCCTCAGCAGACAGATTACAGAAACTTGTAAAAAACCTGGACATGAATGTCCACAAATTCACTGGTTATGGCAAAGAGTTCATCAAGAGACAGAAAATGAGCCCTGATGCTTATGTCCAAGTTGCGCTCCAGTTTACATTTTACAGATGTCATGGACGTCTAGTGCCCACCTATGAAAGTGCATCAATACGCCGCTTTCAAGAGGGACGAGTCGACAACATTCGCTCCTCCACCCCTGAAGCCTTAGCATTTGTCAAAGCTATGGCCAGTGGCTCCAAAATCACTGATGCTGAGAAAATGGAGTTGCTCTGGACTGCCATAAAAGCCCAAACTAATTACACAATTCTAGCAATCACAGGAATGGCAATAGACAATCACTTGTTGGGGCTGCGAGAGATTGCCAAGGAGCTGAAACTGGAAAAGCCAGAGCTGTTTTCAGATACGACCTACGCAACCAGCATCCACTTCACTCTCTCTACAAGCCAGGTTCCTACCACTGAGGAGATGTTCTGCTGCTATGGTCCAGTCGTCCCAAATGGCTACGGAGCCTGCTACAATCCTCAGACGGACCACATCCTCTTCTGCGTGTCCAGCTTCCGTGAATGTGCGGAGACCAGCTCAGATTTGTTTGTGAAGACTCTTGAGGGGTGCCTGAAGGAAATGCAAGATCTGTGCAGAAAATGCAACACTGAAGTTAAACCAGCTGACTCCACACAAAGGATGGAGGGAAACCCTAAGGTAATGAAGAATGGAAGCAAGTCATAAGACGCAGGAATTAGTGTGATTCTAAAAAGAGCTAATTTTGTGAGAAAATTCTAGCCTCAAATATATAGAAAGGCTGATTTATTTAATGCTTGCGCAACATAGTTAAAGTAGGCATTTCCCTTGAGTCTTTAAAAAAATTGCCAAATATAATGATGAACAGTTGTTGCACAGAGATTCTATGAATTTGTAGTCACTTTACAGTGGTAGAGAGTTGATCTAAAAACTGGAATTATTTGGGATTATTTTAGCCAAAAAGAAAGTATGGGGATTTAAAAGGAGCAGATGAAGCTCAGATTCATAGTAGCCTTCCTCAAATTTGTATGGCCATGTGCACACTGTAAAGCTTCAGGAGTCACAACTGCATTACAACATGAGAACGAACATGACTCACTAAAAATTCTTGATTGCCAATTGACATGCTAACCATAGCAATATTCTGGTATCTTGTGTTTTGATATATCTGTTACTTCTGACCAAAGTAATATCACAGATTTTTACAAGATTCACTGTTGAAGTGTTGCCATGTCTTCCGATTATGAGCCAGAGTTATTAAAGAGTAGCTtagtcaaaaaaaaagaaagaaagaaagaaaaaagtactattttctcaccctcaagtggttccaaacctgtaggactttcttttttctgttgtttttacaATCACTAAAGACTTGCTCTTATTTGCTTTTATCTAGCAAGTTCTGGCTACCCAAATCTGCCAATACCTTTCCCTGAGATTTCTGCAGCGCACATAAGAGACAGATAACTACATAATATGTTTTAAGTATCTTATTAACTTGTTGTTTTCTTTGGTTATGTACAAATGGCTTatgatgtttttaaatgtgaCTGTCTACCAGCAGTTTTAAAAGGAAATTTGGCTGTTCAACACAGTTGTCACTCCTGAAAAGTACTGTGGTGTATATAAAACAAGACCAGAAGTTTAAGAGACAACTCAAGTTGAATTTTGTTCGTGCGTGGCCTTACAGTAGGAGTTACTTTCTTCTCTGGAAAACAAAAgactattttgaagaatgtttgactTGTTCAAAACATAACTAAAGGATGACTTTGTACTTGTCACCAGAAAGCAGACTGGGAAATTAAAGTAGCTGCTTGAGCTTAGGGGGAAAAAGGACATTACTGCTGCCTTTGAGATACTGCAGGTGTACTTGTTAAGTATGCATAGAAACAAAATGGCACTGTATATAGCTAAAGCTCTTTACaatctaaaagttttttttattagttatatCAGAGTTGTTATGGATGTCTGTATAGATATGAATGATGAACCTGTGGAACTGGACCAGAAGCTGCTATTTaactttattattgtttgttgttcttttattaatcaaagatgtgtctgtttaaaaaaaaaaaaaaaatatatatatatatatatgtgtgaaagTCTATTTTGGGTTTTGGCCTAGATATAATAACATACAGTATGGTATTTCAGCTTTAAAATATGCATTGTTTTAAGTGTTCTATAAAATACTTTTTCAATGGGccatattttaaaatacacagtCTGCATAAATGTTTAAAGAACATAACCTAATGCGAATCAGCATGTTGCATGAACAGTGTTATGTGGTTCCAGTCTGTGGGCTTGTCTAATGCAATAATTTCAACAGGGATTGTTGACTTCCAGTGCAATAGCAGAACTTTTGAGGCTAAGGTGAACAGTTTAATTAATGTACAGTGAAAAACTGACTAGCTTTTTTTGTATATGTGACAGTGTGATTATATCAAGTCTGAAAATATCATAGACACGTGTTGCACAGTAGAAAAACAATACTTGATGTCTGTCTAATGTATAGAAATGAAGAATGAGTGAGcttgtttttataatgtaaaattatgcagctgaacagttttgtttgtgtgtgtattatttgtAAATCATACAGTATGTTCAATTGTGATTGTTATTCTAAATTGTTCAGCGATAGCTACTTGATAAATGTATTTAAGCACTTTATGAGTAAACCAGATGCTATAACTAAAATAGCTTAGATGAAACAGACTAACAAACCACTTAGTTGTTTAAATTGGAAGAAAAAAACAGCCTTAGCTTAAGTGTTAGTAAGAAGTCAATTGTACATCATGACATCATGTTGAGCATGAATACATACAAAAGAGATGAAAGAGCAAATCCATGTGAAAGTGAAGATGTAACAGAATGTATTTTGTTAAACTGGTGGTGGAGTGCTTAAACTGTGATGTCCTTTAAGATCTTTATTTTTCTAAGTTATAGTTTAAAGAAATAAATCTATTTATCAATATAAATGTACTCTATTAATGCCATAAAAgtactaatttaaaatgacttTGTGTGGACTGAGTTTTTCAAACAAGCATCTATAAATacagctttatttattcattttatcatCACAACACAGATTAGAAAAATATTCTTTATCCTTACTCTACATTTAACATTACAACAATTTATTCCAACTTTAATGGGGAGTGTTGAGTGCATTAAGATTTGAcataatatcaaatattattattcacaGCCAGCT
>TCONS_00012874
CAATGAATGGGACGCAAGTATGCCGCCTGAAACAAGTTAGCAGAAATTATTAACGGCACGTCGGGATTATGAATCTGGATAAACCCTTTGAGACATCTGTTGACTCGACAGAGGGTATGACATTTTGAGGGAACTGGGAAAAACTGTTAGTGAGTTTTCATCTTTCTTGACTGAACTCTTCAACTTTGAGGATGCCAGTTTCAAAAAGGGAACAATCAAAGGACACGGGAGATCCATGTGCTCTCCCGAAGCTCCCCATTCCCCCCTTGAAGCAAACACTGGACATGTACCTGACATGCATGGGTCACCTCGTCCCAGAGGACCAGTTCAGAAAGACCAAGGCCGTTGTAGAGAAATTTGGAGCACCTGGTGGAGTGGGGGAAACCCTTCAGAAAAAGTTACTGGAGAGAAGTGAACAAAAGGCCAATTGGGTGTATGATTATTGGCTTGAAGACATGTATTTGAACAACAGGTTAGCACTACCTGTCAACTCCAGTCCTGTTATGGTCTTTCACAAGCAGAACTTCAAGGGTCAAAGTGATGTCCTCAGatttgcTGCTAATCTCATTTCTGGTGTATTAGAGTATAAAGCTCTAATTGATGGACGTGCTCTCCCTGTAGAGCATGCTCGTGGGCAGTTGGCCGGGACGCCCCTGTGTATGGATCAGTACAACAAGGTCTTCACGTCCTACAGGCTGCCAGGAACAAAAACAGACACTTTAGTGGCTCAGAAGAGCACAGTTATGCCTGAACCCGAACATATAATAGTGGCATGTAAGAATCAGTTTTTTGTTCTAGACGTGATGGTAAACTTTCGCCGGCTGAATGAAAAAGACCTTTACACTCAGCTGGAGCGAATCAGAAAGATGGCAGACATCGAAGAGGAGCGTCAGCCTCCAATCGGCCTGCTCACATCAGATGGCAGAACACAGTGGGCCGAGGCTCGCAACATACTGATCAAAGATTCTACCAACAGGGACTCTCTGGACATGATTGAGCGCTGTTTGTGTCTGGTGTGTTTGGATGAGGAAActgccactgaactgaatgacAGCAACAGAGCTTTGCTAATGCTTCATGGAGGAGGAACGGACAAAAACGGGGGCAACCGATGGTACGACAAACCCATGCAGTTTGTAATAGGTGCTGATGGATGCTGTGGCGTCGTCTGTGAACACTCTCCTTTTGAGGGAATAGTGCTTGTGCAGTGTTCGGAGTATCTACTGAGATACATGAGAGGAAGCCCTTCTAAGCTGGTGAGAGCAGCCAGCATGAGTGAACTTCCAGCCCCCAGACGACTGCGCTGGAAATGCTCTCCAGACATCCAAACCTTCCTCTCAGCCTCAGCAGACAGATTACAGAAACTTGTAAAAAACCTGGACATGAATGTCCACAAATTCACTGGTTATGGCAAAGAGTTCATCAAGAGACAGAAAATGAGCCCTGATGCTTATGTCCAAGTTGCGCTCCAGTTTACATTTTACAGATGTCATGGACGTCTAGTGCCCACCTATGAAAGTGCATCAATACGCCGCTTTCAAGAGGGACGAGTCGACAACATTCGCTCCTCCACCCCTGAAGCCTTAGCATTTGTCAAAGCTATGGCCAGTGGCTCCAAAATCACTGATGCTGAGAAAATGGAGTTGCTCTGGACTGCCATAAAAGCCCAAACTAATTACACAATTCTAGCAATCACAGGAATGGCAATAGACAATCACTTGTTGGGGCTGCGAGAGATTGCCAAGGAGCTGAAACTGGAAAAGCCAGAGCTGTTTTCAGATACGACCTACGCAACCAGCATCCACTTCACTCTCTCTACAAGCCAGGTTCCTACCACTGAGGAGATGTTCTGCTGCTATGGTCCAGTCGTCCCAAATGGCTACGGAGCCTGCTACAATCCTCAGACGGACCACATCCTCTTCTGCGTGTCCAGCTTCCGTGAATGTGCGGAGACCAGCTCAGATTTGTTTGTGAAGACTCTTGAGGGGTGCCTGAAGGAAATGCAAGATCTGTGCAGAAAATGCAACACTGAAGTTAAACCAGCTGACTCCACACAAAGGATGGAGGGAAACCCTAAGGTAATGAAGAATGGAAGCAAGTCATAA

Function

symbol description
chata Predicted to enable choline O-acetyltransferase activity. Involved in locomotory behavior. Predicted to be active in cytoplasm and neuron projection. Is expressed in brain; neurons; post-vent region; and spinal cord. Used to study congenital myasthenic syndrome. Human ortholog(s) of this gene implicated in Alzheimer's disease and congenital myasthenic syndrome 6. Orthologous to human CHAT (choline O-acetyltransferase).

GO:

id name namespace
GO:0042136 neurotransmitter biosynthetic process biological_process
GO:0007274 neuromuscular synaptic transmission biological_process
GO:0007626 locomotory behavior biological_process
GO:0008292 acetylcholine biosynthetic process biological_process
GO:0043005 neuron projection cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0004102 choline O-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080102-2 Predicted to enable choline O-acetyltransferase activity. Involved in locomotory behavior. Predicted to be active in cytoplasm and neuron projection. Is expressed in brain; neurons; post-vent region; and spinal cord. Used to study congenital myasthenic syndrome. Human ortholog(s) of this gene implicated in Alzheimer's disease and congenital myasthenic syndrome 6. Orthologous to human CHAT (choline O-acetyltransferase).

Ensembl:

ensembl_id ENSDARG00000015854

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012873 False 4523 mRNA 0.39 14 29406814 29420885
TCONS_00012874 True 2105 mRNA 0.47 15 29409359 29421331

Neighbor

gene id symbol gene type direction distance location
XLOC_006673 C13H10orf53 coding downstream 280 29404218 ~ 29406534 (-)
XLOC_006672 NA coding downstream 176879 29224992 ~ 29229935 (-)
XLOC_006671 NA coding downstream 556920 28827293 ~ 28849894 (-)
XLOC_006670 NA coding downstream 660237 28743798 ~ 28746577 (-)
XLOC_006668 NA coding downstream 687584 28677121 ~ 28719230 (-)
XLOC_006675 slc18a3a coding upstream 718 29422049 ~ 29424454 (-)
XLOC_006676 rgra coding upstream 24895 29446226 ~ 29455859 (-)
XLOC_006677 cdhr1a coding upstream 58679 29480010 ~ 29505946 (-)
XLOC_006678 NA coding upstream 85282 29506613 ~ 29701941 (-)
XLOC_006679 NA coding upstream 288014 29709345 ~ 29803009 (-)
XLOC_006471 BX537274.2 misc downstream 19141909 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 28580589 825904 ~ 826225 (-)
XLOC_006665 NA non-coding downstream 834350 28546412 ~ 28572464 (-)
XLOC_006680 NA non-coding upstream 516064 29937395 ~ 29942962 (-)
XLOC_006682 NA non-coding upstream 563546 29984877 ~ 29985502 (-)
XLOC_006689 NA non-coding upstream 824342 30245673 ~ 30250564 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_09815706_09822346 CHATA, CHAT coding CI01000012 null 9815706 ~ 9822671 (+)