XLOC_006675 (slc18a3a)


Basic Information

Item Value
gene id XLOC_006675
gene name slc18a3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29422049 ~ 29424454 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012875
ATTCAGGCTCCGCGCGTCCAGCCACAATGACAGCGTGAAGAAGGAGGGAAAGCGAGAAGGCTATTTTTTGACCTGACTGTGAGTTTTTGACCCGAATACGATGAAACAACACTGCGTGGCAGCAGTCGCGAGAGAGGAAATGCACGCGCAAAGAAGGACTGCAAGGTAAAGCAGGAAAAGTTGCTCTGCGCGCCGAGGCTTCACTATTCAGTGAGTGCTGGGCAACCCGGTGCGCGCAGACTTTCTCGGGGAGAGAAGCACAGCGTAGAAGCGAGTTAAGAGCATTTTTCCTGAAGCGACCAAAGTGTGTGGATCATGGCTACGGAGGAATCAGGTGGCTTGGCGCAAACCGCCGCCGTTAAACTTTCGGAGATGGGGGAAAGAACTAAACAGTTAGGAAATGCGATCCAGGACCCCGAGCGACAAAGAAGGATTATTCTAGTCATTGTGTGCGTGGCACTTCTGCTAGACAATATGCTTTACATGGTCATCGTGCCAATTGTGCCCGACTACTTAGCGCACTTAGAGAGCGAATCGGAGCAGGCGCATGTAAAAGGTAATTCCTCAATTAACATCACGCAAAACGAGAACTTTGACCTGCAGATCGGCGTGCTTTTCGCTTCAAAAGCCATTTTGCAGCTCCTTGTCAATCCTTTGACTGGAACTTTCATAGACCGAGTCGGCTACGACATCCCACTTTTAATTGGACTCAGTATCATGTTCGTCTCAACGTGCATTTTTGCCTTCGCCGAGAACTACGCGACCCTGTTCATGGCGCGCAGTCTGCAAGGGCTCGGCTCGGCGTTCGCAGACACTTCAGGAATTGCCATGATCGCGGACAAGTACGCGGAGGAGTCGGAGAGGAGTCGCGCGCTGGGCATTGCCCTCGCCTTCATCTCCTTCGGAAGCCTGGCGGCTCCCCCGTTTGGAGGGGTACTGTATGAGTTCGCGGGCAAACGCTTCCCGTTCATTGCGCTcgcatgtgtgtgtttggcagACGGTATACTATGCCTGACTGTGCTCAAGCCCTTTTCCAGTAGGACTAGAGAGAACATGCCGGTCGGCACCCCAATTTACAAACTAATGATCGACCCGTACATAGCGGTCGTGGCAGGAGCTTTGACCACATGTAACATTCCCCTTGCTTTTCTGGAGCCCACCATCGCAAACTGGATGGAAGAGACCATGAATGCATCCCAATGGCAGATCGGGATCACCTGGCTGCCAGCCTTCTTCCCTCACATATTAGGCGTTTATCTCACTGTCAAGCTGGCAGCAAAGTATCCACACTTGCAGTGGTTTTATGGTGCACTTGGCATGGTCATCATTGGTGCCAGCTCGTGCATTGTGCCGGCTTGCAAAAACTTTGAGCAGCTGATAATCCCCCTGTGTGGCGTTTGCTTCGGCATTGCACTGGTAGACACAGCTTTATTACCCACACTCGCTTTTCTAGTAGACGTCCGCCACGTGTCTGTGTATGGTAGTGTATACGCTATTGCAGACATCTCCTACTGTGTTGCCTACGCGCTGGGCCCGATCGTGGCCGGTAAAATAGTGCACGACCTCGGTTTTGTGCAGCTCAATCTGGGCATGGGTCTGGCGAACGTACTTTACGCACCAGCCCTGCTACTGCTGCGCAACGTGAGCTTAATGAAACCATCCCATTCCGAGAGAAACATGCTACTGGAGGAGGGAGCCACAGGTCTGTACGACACGATTAGAATGGAAGAACGCCAAAGAAAGAAGCACGGCTACAGTTCGTCCGGTAACTGCGTGCCGATCGACGAGAACGGGACATTTGCTGGACAATCAAAGTCATTCTCTGAAGAAGAGACGTCCGAGCCAGAATACATATAGTCTGAGTTGTCTGTCCCTGATACAATCCTGTTTAAAAGAAAACCTCTgctgaatataaatgtttttcattcactcatttacatGTTACTCATTCTCCCGAGGAAAAACCTGCTGGTGAACGGCTTACaatcatacaatgatttattcaATTTACTCAAATGATGagatcaatattttttttcctccaatacaaaaaaaatgcaaaatatttatttaattgtatagtATTCCGCTGTATTAAGTTGTATTCAGGGATATAAATATGGTGCAAACATATTAAATATGAAGATGCGTGTGTACGTATTAAATGGGCCTTCGTTCAAGTTATTCCGCCGATTTTGTGCTGTTACAACTAATATGCAAAATGTCACCTGACACCTTCATAGGAAAAAAAAGATGGAACTGGTGTGAATCCTGCCTTCTCAGTGTCTGTTTCGAGTATTAAATGTTTAGGGTGTGTTTCTGGAATGCATTGCTGTATATTACGAATTATAATGGTGTACATATGTGCATATCAAATGTACATAattaaagaaaactgtgagatGC
>TCONS_00013484
ATGGCTACGGAGGAATCAGGTGGCTTGGCGCAAACCGCCGCCGTTAAACTTTCGGAGATGGGGGAAAGAACTAAACAGTTAGGAAATGCGATCCAGGACCCCGAGCGACAAAGAAGGATTATTCTAGTCATTGTGTGCGTGGCACTTCTGCTAGACAATATGCTTTACATGGTCATCGTGCCAATTGTGCCCGACTACTTAGCGCACTTAGAGAGCGAATCGGACACGCAAAACGAGAACTTTGACCTGCAGATCGGCGTGCTTTTCGCTTCAAAAGCCATTTTGCAGCTCCTTGTCAATCCTTTGACTGGAACTTTCATAGACCGAGTCGGCTACGACATCCCACTTTTAATTGGACTCAGTATCATGTTCGTCTCAACGTGCATTTTTGCCTTCGCCGAGAACTACGCGACCCTGTTCATGGCGCGCAGTCTGCAAGGGCTCGGCTCGGCGTTCGCAGACACTTCAGGAATTGCCATGATCGCGGACAAGTACGCGGAGGAGTCGGAGAGGAGTCGCGCGCTGGGCATTGCCCTCGCCTTCATCTCCTTCGGAAGCCTGGCGGCTCCCCCGTTTGGAGGGGTACTGTATGAGTTCGCGGGCAAACGCTTCCCGTTCATTGCGCTcgcatgtgtgtgtttggcagACGGTATACTATGCCTGACTGTGCTCAAGCCCTTTTCCAGTAGGACTAGAGAGAACATGCCGGTCGGCACCCCAATTTACAAACTAATGATCGACCCGTACATAGCGGTCGTGGCAGGAGCTTTGACCACATGTAACATTCCCCTTGCTTTTCTGGAGCCCACCATCGCAAACTGGATGGAAGAGACCATGAATGCATCCCAATGGCAGATCGGGATCACCTGGCTGCCAGCCTTCTTCCCTCACATATTAGGCGTTTATCTCACTGTCAAGCTGGCAGCAAAGTATCCACACTTGCAGTGGTTTTATGGTGCACTTGGCATGGTCATCATTGGTGCCAGCTCGTGCATTGTGCCGGCTTGCAAAAACTTTGAGCAGCTGATAATCCCCCTGTGTGGCGTTTGCTTCGGCATTGCACTGGTAGACACAGCTTTATTACCCACACTCGCTTTTCTAGTAGACGTCCGCCACGTGTCTGTGTATGGTAGTGTATACGCTATTGCAGACATCTCCTACTGTGTTGCCTACGCGCTGGGCCCGATCGTGGCCGGTAAAATAGTGCACGACCTCGGTTTTGTGCAGCTCAATCTGGGCATGGGTCTGGCGAACGTACTTTACGCACCAGCCCTGCTACTGCTGCGCAACGTGAGCTTAATGAAACCATCCCATTCCGAGAGAAACATGCTACTGGAGGAGGGAGCCACAGGTCTGTACGACACGATTAGAATGGAAGAACGCCAAAGAAAGAAGCACGGCTACAGTTCG

Function

symbol description
slc18a3a Predicted to enable acetylcholine transmembrane transporter activity. Predicted to be involved in chemical synaptic transmission. Predicted to act upstream of or within neurotransmitter transport; transmembrane transport; and xenobiotic transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AP-1 adaptor complex and AP-2 adaptor complex. Predicted to be active in terminal bouton. Is expressed in brain; retina; and spinal cord. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 21. Orthologous to human SLC18A3 (solute carrier family 18 member A3).

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0055085 transmembrane transport biological_process
GO:0042908 xenobiotic transport biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0030121 AP-1 adaptor complex cellular_component
GO:0030122 AP-2 adaptor complex cellular_component
GO:0043195 terminal bouton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005277 acetylcholine transmembrane transporter activity molecular_function
GO:0042910 xenobiotic transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-990 Predicted to enable acetylcholine transmembrane transporter activity. Predicted to be involved in chemical synaptic transmission. Predicted to act upstream of or within neurotransmitter transport; transmembrane transport; and xenobiotic transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AP-1 adaptor complex and AP-2 adaptor complex. Predicted to be active in terminal bouton. Is expressed in brain; retina; and spinal cord. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 21. Orthologous to human SLC18A3 (solute carrier family 18 member A3).

Ensembl:

ensembl_id ENSDARG00000006356

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012875 False 2406 mRNA 0.48 1 29422049 29424454
TCONS_00013484 True 1410 lncRNA 0.52 2 29422694 29424139

Neighbor

gene id symbol gene type direction distance location
XLOC_006674 chata coding downstream 718 29406814 ~ 29421331 (-)
XLOC_006673 C13H10orf53 coding downstream 15515 29404218 ~ 29406534 (-)
XLOC_006672 NA coding downstream 192114 29224992 ~ 29229935 (-)
XLOC_006671 NA coding downstream 572155 28827293 ~ 28849894 (-)
XLOC_006670 NA coding downstream 675472 28743798 ~ 28746577 (-)
XLOC_006676 rgra coding upstream 21772 29446226 ~ 29455859 (-)
XLOC_006677 cdhr1a coding upstream 55556 29480010 ~ 29505946 (-)
XLOC_006678 NA coding upstream 82159 29506613 ~ 29701941 (-)
XLOC_006679 NA coding upstream 284891 29709345 ~ 29803009 (-)
XLOC_006680 NA coding upstream 512941 29937395 ~ 29942962 (-)
XLOC_006471 BX537274.2 misc downstream 19157144 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 28595824 825904 ~ 826225 (-)
XLOC_006668 NA non-coding downstream 702819 28677121 ~ 28719230 (-)
XLOC_006665 NA non-coding downstream 849585 28546412 ~ 28572464 (-)
XLOC_006682 NA non-coding upstream 560423 29984877 ~ 29985502 (-)
XLOC_006689 NA non-coding upstream 821219 30245673 ~ 30250564 (-)

Expression


Co-expression Network