XLOC_006676 (rgra)


Basic Information

Item Value
gene id XLOC_006676
gene name rgra
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29446226 ~ 29455859 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012876
ATTATCAGAGCGCTCAGAGACACAAAGGCTTGTTGTGTAACTGAATGAGCGCTTTACGGTCGCCTTGTGTAAATACGTATCAGGGGTCAGTGGTAGGAGTTGTTGTGATCATTAATACATTCTTGCGCGGATTGAAGCAGACAGAGGGGGCTTTACATAATTACGTTCATGCTTTTTCACGTGAAATGCTCCTTTAAAAGAAGGCTTCGATTGAGCACACCGAGGCACATCTCGCGCGCGAGCGAGCGGACTGTCATTCTTCACAGTTGGGTGGTAaaattgtctttaatatggtgACGTCGTATCCATTACCGGAGGGATTCTCCGAGTTCGATGTGTTTTCCCTCGGATCTTGTCTGCTCGTGGAAGGTCTCCTCGGATTTTTCCTGAACGCTGTCACCGTTATTGCTTTCCTTAAAATCAGAGAATTGCGGACCCCAAGTAATTTCCTCGTGTTCAGTCTGGCCATGGCAGATATGGGCATTTCAACGAACGCCACAGTCGCGGCATTCTCTAGCTTTCTGAGATACTGGCCTTATGGATCAGATGGATGCCAGACCCATGGCTTCCAAGGCTTTATGACTGCTCTTGCCAGCATACACTTTATTGCAGCCATTGCTTGGGACAGATACCACCAGTACTGCACAAGGACAAAGCTGCAGTGGAGCAGTGCCATCACCCTGGTTCTCTTCACCTGGCTCTTCACTGCCTTCTGGGCTGCCATGCCTCTGTTTGGTTGGGGAGAGTATGACTATGAGCCTCTGAGGACCTGCTGCACACTGGACTATAGCAAGGGTGACAGGAACTACGTATCTTACTTGATCCCCATGTCCATTTTCAACATGGGCATCCAGGTGTTTGTGGTGCTGTCTTCCTATCAGTCCATTGATAAGAAATTCAAGAAGACCGGCCAGGCCAAGttcaaCTGTGGTACTCCTCTGAAGACCATGCTGTTCTGCTGGGGTCCCTATGGAATCCTGGCTTTCTACGCCGCAGTGGAGAACGCAACGCTTGTCTCTCCGAAACTAAGGATGATTGCACCCATTTTGGCCAAAACCTCACCTACTTTCAACGTCTTTGTTTACGCCCTTGGAAATGAGAACTACAGGGGGGGAATCTGGCAGCTGCTGACCGGCCAAAAGATTGAGAGTCCTGCTATTGAGAACAAGTCCAAATAAACTAAACACATGAAAATAA

Function

symbol description
rgra Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gut; heart; nervous system; testis; and yolk syncytial layer. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 44. Orthologous to human RGR (retinal G protein coupled receptor).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040924-6 Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gut; heart; nervous system; testis; and yolk syncytial layer. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 44. Orthologous to human RGR (retinal G protein coupled receptor).

Ensembl:

ensembl_id ENSDARG00000054890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012876 True 1197 mRNA 0.48 7 29446226 29455859

Neighbor

gene id symbol gene type direction distance location
XLOC_006675 slc18a3a coding downstream 21772 29422049 ~ 29424454 (-)
XLOC_006674 chata coding downstream 24895 29406814 ~ 29421331 (-)
XLOC_006673 C13H10orf53 coding downstream 39692 29404218 ~ 29406534 (-)
XLOC_006672 NA coding downstream 216291 29224992 ~ 29229935 (-)
XLOC_006671 NA coding downstream 596332 28827293 ~ 28849894 (-)
XLOC_006677 cdhr1a coding upstream 24151 29480010 ~ 29505946 (-)
XLOC_006678 NA coding upstream 50754 29506613 ~ 29701941 (-)
XLOC_006679 NA coding upstream 253486 29709345 ~ 29803009 (-)
XLOC_006680 NA coding upstream 481536 29937395 ~ 29942962 (-)
XLOC_006681 hif1an coding upstream 496774 29952633 ~ 29980215 (-)
XLOC_006471 BX537274.2 misc downstream 19181321 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 28620001 825904 ~ 826225 (-)
XLOC_006670 NA non-coding downstream 699649 28743798 ~ 28746577 (-)
XLOC_006668 NA non-coding downstream 726996 28677121 ~ 28719230 (-)
XLOC_006665 NA non-coding downstream 873762 28546412 ~ 28572464 (-)
XLOC_006682 NA non-coding upstream 529018 29984877 ~ 29985502 (-)
XLOC_006689 NA non-coding upstream 789814 30245673 ~ 30250564 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_09796386_09801947 RGR, RGRA coding CI01000012 null 9796291 ~ 9802544 (+)