XLOC_006677 (cdhr1a)


Basic Information

Item Value
gene id XLOC_006677
gene name cdhr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29480010 ~ 29505946 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012877
aatttttattaaattaaattattaatcaatataattatcaatcattttgtcttcaactgttaaTATCTTTGgtcttgcactttttttttttttttttttttttttgtactcccATATCCCCCCCACCCCTCCAGCATTCCAGCATTCTGAATGCGATATTTCAGTAGTACTACAACTAAGATGGTGTGTAACCTGTCACATCAGTTCAGGTGTGCTGCTCGCGAGCCCCTCTTGTGGCCAGAAATTACTATGCAGCAAAGCTGGGCTTCTAAAAATGCACTGAGGGTTAAGGCTTGTGTCATTGGATTAGGCTTTAGCACCTGCCTCAGCTCTCCTCAATCTGAAACAAACACCCTTAGAAGGACACCGACATAGCTCTGTTCAATAGTGTGCTGTCTGGCCTGCTGTAACCGCTCTGCTTTGTTAGGATGAAGAATGCAAGGGAAATACAGTTTTCATCATTTCTTCTGTTAGCGCATTTCTGCTTTGCACAGAGTGACTATGCACCCTATTTCTATGATAATGGGCCCAACAGTAACAACGGAAATATGGCACTCCTCAATCTCTCAGAGGATACACCAAGAGGAACACAGATATATGTTCTTAATGGAACTGACCCAGAAGGCCAGCCAGTAAAGTATGGAATTACCTTTGAACCCGGATCCAAAGAGTTTTTTCGTGTTCATCCCAAATCTGGAGTAGTAACATTAATAGAGGACCTTGACAGAGAGGCACAAGATGAGATTGAAGTCTTTGTCAGCATCTCTGATAGCCTTAATAAAGTAGTTGAAAAGGTTTCAGTTTTTATCATGGATGCCAATGATGAGAGACCACAGTTTCAAAACATGCCTTCCATCGTAGATGTGCCAGAGAACACAACGTCTGGAAGTAGCATCTATAAGGTGCAGGCAGTGGACAGGGACACCGGCTCAGGAGGATCAGTCACTTACTTCCTTCAGAGCAGTGAGCAAAGCCCAAAGTTTGCCATTGACCATCATAGCGGCGTGCTGCGGATAAAACCTGGAGAATCCCTCGATTATGAAAAATCGCGGACGCATTTCATCACTGTGGTGGCAAAGgaTGGAGGAGGCATTTACAAGGGCAAGCAACAAGTGATGTCATCATCTGCTACTTTGACCATAAATGTGATCGACACTCAAGATTCTCCCCCGATTTTTATTGGAACTCCTTACTTTGGTTATGTCTATGAAGTCTCTTCGCCAGGATCTGAGATATTTACAGTTTCTGCCAAAGATGGAGACATGGATAATCCAAATACGATCATATATTCATTGGACTCTGGAGCAGATGGGTCCTTTTCCATTAATAAAACCAGTGGAGTCATCACTCTGAATTTGTACCCAGCAGACCTGAGGAGGGAAGTTTTTAATATTAAAGTCAAGgcATTGGAAATCAGTCCAGAAGGAAAGCGCTTGGACTTTGCCACCACCACTGTGACCATTCGGGTAGTGGATCTAAACAACCATCCACCCACATTCTATGGAGAGAATGGACCTCAAAATGTGTTCGAATTAACAATGTATGAACATCCTCAAGAGGGAGAATTTCTGAGGGGCTTGAAAATCACAGTCAATGATTCCGACCAGGGATCAAATGCAAAATTCAACCTCAGACTAGTGGGCCCGGGCCGCATGTTAAGAGTGGTTCCTCAAACTGTTCTGAATGAAGCCCAAGTCACTGTCCTAGTGGAGGATTCTGCTGCAATGGATTTTGAGAAATCACAGTTCCTGACTTTTAAgCTGCTGGCTGTAGAGATCGACACACCAGAGAGATTCAGTGCCACTGCAGACATTATCATTCATCTGCTGGACACCAATGATAACGCTCCCAAATTCACCTCTGATTTCTACATCGCCCGGATCCCAGAAAACTCACCCGGAGGATCCAATGTTGTGTCTGTGACTGCCATGGATCCCGATTCTGGTATATGGGGTGTAGTCAAATACTCCATCTATGGCTCTGGAGCCGACATCTTTCTCATTCAGGCTGATTCTGGAATCATCTACACTCAGCCTTGGGCCAGTCTGGATGCTGAGGTCAAATCCAAGTATAACTTCTACGTGAAAGCCGAAGACCCTGAAGGAAAATACAGCCTCGCGGAAGTCTTTGTCACCATTACTGACCTCAATGACCATCCACCAGCGTTTAATGAAAACTCTTTGGAGCAGACCATGGTGATTGGTGCACCTGTCAAAATAGAgGCGATTGATGAAGATGCAGAGGAGCCCAACAATCTCATTGAATACTCCATAATGAAAGCCGATCCAGACAACATATTTGACATTAATGCAGACACGGGAGAAATAAAGCTGAAGCCGTACATCAAGTCAATGGACATTGTCCAGAATATCACCAATCAGAGAGACTGTACCTGGTCTGTTGTTGTTCAGGCTAAAGACAGAGGTTCACCATCCTTTAGCACAACCACAGTGGTAAAGATTGACATCACAGAAGCGACTCCACTCAAGGGACCTTTGACGTCCTTTTTTATGAATAGTAGGGAAAATCCCATGCATTTCCTAGGCTTGATAAGTGGTGTTATTCTAATCTTAGTCTTTGTGACAGTCATTATCTCTACTGTAATATTTGTGAGAAGAAACAAGGCCAACAGGATTCTACCTTCCCGTCGCATCATACGAAAGAAGCGTAAACCCCAGAAACAAGACGACTTCCAAGAACCATTCAGAGAAGAGCAGGAGATCCCTAGAGCAGACAATGTCAACTTTAACAATAACATCAAAGTGTGTTCTCATCGAACACCTCCATCACCTCCGAATGCCCCAGTCATGCCTCCACCATTGCCAAGTCACTGTAGACATGGTGAACGAGAATGGACAGTACCTACAGTTTCTGCATCTGTAGCGTCCAAGTCAAAGAAGAAATCCCACCGGTGTAAAGACAATCCTGTTAATACAGCGCTAGTTTCTGAGCTCAAACTTAAACTGGAACAGAAAAACATGGCCAACCGATACTGATAAGTTGAAATGCATGTGAAAATCTCAGTGTTCAATGGAAAGCAGACAGTTTCCCAGGCTAATTCATTGACAAGTTTCAACAGACAAGGATAATTTCAGGAAGGATTTACACAAGCACACCAACCCAGCAGGCCATCGCTGCAAGCTACTTACTGTATACTTCCTACTGCGTGCAGAGTTCAGCTAGGATTGCAAGCTGAACCTAATGAAAATGGGGGAAAGTGTCACTAGCCAAGACTAACACCCTGCTAATCACTATGACACCGTGCACTGCCCTCTTCTGGGTGGAAAATTACAGCTTCACATTTACTTTAAGCTTTTTGGATATTTTTCCATCTGTGGATACCTTATTCAGAAATAGAAATTTGATTGCAGATTATTGAAAGACATTAAACATGCctgattttttatattaattattcatcATATGATGTTTGTTTTACCTAGTATATGTGGTTTATAAAAGGGAACaatgttttgttattataattataatatatattttttacaacacaGTAGTTTCCGTGAGGCTACCAAATACACGCATTTTGGGTCTCATACAATTTCTTGTGGATGTTGAACATGCCAAAATGTGTAGTTAGTTTGATAAACTCCTAAAGGACAAATATTGTAAAAAGGACTGTGTATAGTTGTCTTTCTGTGAGGAACACCACACAGTTTGTCTATCATGTTGTAAACGTTTCATGAATTTATTTTACCTTCTCAGTTTTTTATGCAGTTcagtattaaatgtaaaatacatggAGTGACCACTGTTTATATTCAccttttgtaaataaatgaatattttattcaaaTCAAATGGTCATTAGATATAAACAGTTTTTAATGCAGTTTCTTTAATGTATTGTAggattgaaaagaaaaaaaaaactgttatatttcCTTTAATGCCACATTTCATCATATGGGCCGGCAGTGCAGTTGGTGACCTATTTTTTCTCCACCATTTATTTTAAGTACAGATTTTAATGCCTGGATTTTATGcagatttatttttcaacatacaagattttattttgtgtgtattgtgtacaaatatttcagaaaccatGTGTTGGTGGTCACGTTAAGATTTAACAAATTATGAGTTTGCTCTCTCTGGCTTTTCTAAACCTCTATTTACAGTAATTGTGGTTTTTAAGACATACACTGTGATACGTTTTTGAAGGGTGAAGACTTTTTAACATGTCTTTTTGTTCTTGAAGTCCCCTCTGCATATGATTGTTGCGATGAGAAAAGTCTGTTTTCAGATAGCAAAAGCAGCTCTGGGGGGGTAAAAGCACAAATGACATGGAATTATACCCTGTGGGAAGCAAGTaggattacagttttttttagagAGGATTACAAACTTGTAAAGTGCACTGATGGACAAggataaaagaaaaacagaacattttaacCAAGatgtgtacattttattttggaCTGCACCAGTTTATTTTGGAGTCCTCTGATTGAGGTCACGGAGCTCTGGACAAACAGTTTAAATGTAGGAGCTTCTTGTAAAGGCAAAGTATCTAAGATTTCTTAATTTAAACATGCAAAAACCACTgcagtgttatatatttttgcAGACTTATGTAGACATTTTTGAAGAACGGTGAAATGCAgataaaaaaagctattttaactATACGATCTCATTTATAAATGAGGCTTACACACAAAGCATGTGGAACTTGTGTATGGCAATTCTCATGCAAAAGTTGTGgtctataaaatacaaaaatacttgTCGGGAGAATGTGTGCAGCTGTGAATAAActcttttaacacatttaacttaaatattgactTAATTGAATCACCTTAAATAATCTT
>TCONS_00012878
GAAACAAACACCCTTAGAAGGACACCGACATAGCTCTGTTCAATAGTGTGCTGTCTGGCCTGCTGTAACCGCTCTGCTTTGTTAGGATGAAGAATGCAAGGGAAATACAGTTTTCATCATTTCTTCTGTTAGCGCATTTCTGCTTTGTAGGAGCACAGAGTGACTATGCACCCTATTTCTATGATAATGGGCCCAACAGTAACAACGGAAATATGGCACTCCTCAATCTCTCAGAGGATACACCAAGAGGAACACAGATATATGTTCTTAATGGAACTGACCCAGAAGGCCAGCCAGTAAAGTATGGAATTACCTTTGAACCCGGATCCAAAGAGTTTTTTCGTGTTCATCCCAAATCTGGAGTAGTAACATTAATAGAGGACCTTGACAGAGAGGCACAAGATGAGATTGAAGTCTTTGTCAGCATCTCTGATAGCCTTAATAAAGTAGTTGAAAAGGTTTCAGTTTTTATCATGGATGCCAATGATGAGAGACCACAGTTTCAAAACATGCCTTCCATCGTAGATGTGCCAGAGAACACAACGTCTGGAAGTAGCATCTATAAGGTGCAGGCAGTGGACAGGGACACCGGCTCAGGAGGATCAGTCACTTACTTCCTTCAGAGCAGTGAGCAAAGCCCAAAGTTTGCCATTGACCATCATAGCGGCGTGCTGCGGATAAAACCTGGAGAATCCCTCGATTATGAAAAATCGCGGACGCATTTCATCACTGTGGTGGCAAAGgaTGGAGGAGGCATTTACAAGGGCAAGCAACAAGTGATGTCATCATCTGCTACTTTGACCATAAATGTGATCGACACTCAAGATTCTCCCCCGATTTTTATTGGAACTCCTTACTTTGGTTATGTCTATGAAGTCTCTTCGCCAGGATCTGAGATATTTACAGTTTCTGCCAAAGATGGAGACATGGATAATCCAAATACGATCATATATTCATTGGACTCTGGAGCAGATGGGTCCTTTTCCATTAATAAAACCAGTGGAGTCATCACTCTGAATTTGTACCCAGCAGACCTGAGGAGGGAAGTTTTTAATATTAAAGTCAAGgcATTGGAAATCAGTCCAGAAGGAAAGCGCTTGGACTTTGCCACCACCACTGTGACCATTCGGGTAGTGGATCTAAACAACCATCCACCCACATTCTATGGAGAGAATGGACCTCAAAATGTGTTCGAATTAACAATGTATGAACATCCTCAAGAGGGAGAATTTCTGAGGGGCTTGAAAATCACAGTCAATGATTCCGACCAGGGATCAAATGCAAAATTCAACCTCAGACTAGTGGGCCCGGGCCGCATGTTAAGAGTGGTTCCTCAAACTGTTCTGAATGAAGCCCAAGTCACTGTCCTAGTGGAGGATTCTGCTGCAATGGATTTTGAGAAATCACAGTTCCTGACTTTTAAgCTGCTGGCTGTAGAGATCGACACACCAGAGAGATTCAGTGCCACTGCAGACATTATCATTCATCTGCTGGACACCAATGATAACGCTCCCAAATTCACCTCTGATTTCTACATCGCCCGGATCCCAGAAAACTCACCCGGAGGATCCAATGTTGTGTCTGTGACTGCCATGGATCCCGATTCTGGTATATGGGGTGTAGTCAAATACTCCATCTATGGCTCTGGAGCCGACATCTTTCTCATTCAGGCTGATTCTGGAATCATCTACACTCAGCCTTGGGCCAGTCTGGATGCTGAGGTCAAATCCAAGTATAACTTCTACGTGAAAGCCGAAGACCCTGAAGGAAAATACAGCCTCGCGGAAGTCTTTGTCACCATTACTGACCTCAATGACCATCCACCAGCGTTTAATGAAAACTCTTTGGAGCAGACCATGGTGATTGGTGCACCTGTCAAAATAGAgGCGATTGATGAAGATGCAGAGGAGCCCAACAATCTCATTGAATACTCCATAATGAAAGCCGATCCAGACAACATATTTGACATTAATGCAGACACGGGAGAAATAAAGCTGAAGCCGTACATCAAGTCAATGGACATTGTCCAGAATATCACCAATCAGAGAGACTGTACCTGGTCTGTTGTTGTTCAGGCTAAAGACAGAGGTTCACCATCCTTTAGCACAACCACAGTGGTAAAGATTGACATCACAGAAGCGACTCCACTCAAGGGACCTTTGACGTCCTTTTTTATGAATAGTAGGGAAAATCCCATGCATTTCCTAGGCTTGATAAGTGGTGTTATTCTAATCTTAGTCTTTGTGACAGTCATTATCTCTACTGTAATATTTGTGAGAAGAAACAAGGCCAACAGGATTCTACCTTCCCGTCGCATCATACGAAAGAAGCGTAAACCCCAGAAACAAGACGACTTCCAAGAACCATTCAGAGAAGAGCAGGAGATCCCTAGAGCAGACAATGTCAACTTTAACAATAACATCAAAGTGTGTTCTCATCGAACACCTCCATCACCTCCGAATGCCCCAGTCATGCCTCCACCATTGCCAAGTCACTGTAGACATGGTGAACGAGAATGGACAGTACCTACAGTTTCTGCATCTGTAGCGTCCAAGTCAAAGAAGAAATCCCACCGGTGTAAAGACAATCCTGTTAATACAGCGCTAGTTTCTGAGCTCAAACTTAAACTGGAACAGAAAAACATGGCCAACCGATACTGATAAGTTGAAATGCATGTGAAAATCTCAGTGTTCAATGGAAAGCAGACAGTTTCCCAGGCTAATTCATTGACAAGTTTCAACAGACAAGGATAATTTCAGGAAGGATTTACACAAGCACACCAACCCAGCAGGCCATCGCTGCAAGCTACTTACTGTATACTTCCTACTGCGTGCAGAGTTCAGCTAGGATTGCAAGCTGAACCTAATGAAAATGGGGGAAAGTGTCACTAGCCAAGACTAACACCCTGCTAATCACTATGACACCGTGCACTGCCCTCTTCTGGGTGGAAAATTACAGCTTCACATTTACTTTAAGCTTTTTGGATATTTTTCCATCTGTGGATACCTTATTCAGAAATAGAAATTTGATTGCAGATTATTGAAAGACATTAAACATGCctgattttttatattaattattcatcATATGATGTTTGTTTTACCTAGTATATGTGGTTTATAAAAGGGAACaatgttttgttattataattataatatatattttttacaacacaGTAGTTTCCGTGAGGCTACCAAATACACGCATTTTGGGTCTCATACAATTTCTTGTGGATGTTGAACATGCCAAAATGTGTAGTTAGTTTGATAAACTCCTAAAGGACAAATATTGTAAAAAGGACTGTGTATAGTTGTCTTTCTGTGAGGAACACCACACAGTTTGTCTATCATGTTGTAAACGTTTCATGAATTTATTTTACCTTCTCAGTTTTTTATGCAGTTcagtattaaatgtaaaatacatggAGTGACCACTGTTTATATTCAccttttgtaaataaatgaatattttattcaaaTCAAATGGTCATTAGATATAAACAGTTTTTAATGCAGTTTCTTTAATGTATTGTAggattgaaaagaaaaaaaaaactgttatatttcCTTTAATGCCACATTTCATCATATGGGCCGGCAGTGCAGTTGGTGACCTATTTTTTCTCCACCATTTATTTTAAGTACAGATTTTAATGCCTGGATTTTATGcagatttatttttcaacatacaagattttattttgtgtgtattgtgtacaaatatttcagaaaccatGTGTTGGTGGTCACGTTAAGATTTAACAAATTATGAGTTTGCTCTCTCTGGCTTTTCTAAACCTCTATTTACAGTAATTGTGGTTTTTAAGACATACACTGTGATACGTTTTTGAAGGGTGAAGACT

Function

symbol description
cdhr1a Predicted to enable calcium ion binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 15. Orthologous to human CDHR1 (cadherin related family member 1).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040924-4 Predicted to enable calcium ion binding activity. Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 15. Orthologous to human CDHR1 (cadherin related family member 1).

Ensembl:

ensembl_id ENSDARG00000004643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012877 False 4844 mRNA 0.40 17 29480010 29505946
TCONS_00012878 True 3862 mRNA 0.41 18 29480656 29505604

Neighbor

gene id symbol gene type direction distance location
XLOC_006676 rgra coding downstream 24151 29446226 ~ 29455859 (-)
XLOC_006675 slc18a3a coding downstream 55556 29422049 ~ 29424454 (-)
XLOC_006674 chata coding downstream 58679 29406814 ~ 29421331 (-)
XLOC_006673 C13H10orf53 coding downstream 73476 29404218 ~ 29406534 (-)
XLOC_006672 NA coding downstream 250075 29224992 ~ 29229935 (-)
XLOC_006678 NA coding upstream 667 29506613 ~ 29701941 (-)
XLOC_006679 NA coding upstream 203399 29709345 ~ 29803009 (-)
XLOC_006680 NA coding upstream 431449 29937395 ~ 29942962 (-)
XLOC_006681 hif1an coding upstream 446687 29952633 ~ 29980215 (-)
XLOC_006682 NA coding upstream 478931 29984877 ~ 29985502 (-)
XLOC_006471 BX537274.2 misc downstream 19215105 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 28653785 825904 ~ 826225 (-)
XLOC_006671 NA non-coding downstream 630116 28827293 ~ 28849894 (-)
XLOC_006670 NA non-coding downstream 733433 28743798 ~ 28746577 (-)
XLOC_006668 NA non-coding downstream 760780 28677121 ~ 28719230 (-)
XLOC_006665 NA non-coding downstream 907546 28546412 ~ 28572464 (-)
XLOC_006689 NA non-coding upstream 739727 30245673 ~ 30250564 (-)

Expression


Co-expression Network