XLOC_006678


Basic Information

Item Value
gene id XLOC_006678
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29506613 ~ 29701941 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012880
ACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGCTGTGCCTGGGAGATGATGTGGAAGCCGTATGTGGTCCAGGGGAAGTATTTATGGCCCTGCTTGAATCTGGTTGGGCTTCGCTGATAGCTGAGATAATGGGAGCGAATGGGATGCAGCGAGCTGTTCTAATGGCACCAACAAGACATGGGAACAGCCAGGATAAATAAATTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGctttGAACAATCACtatctgcagaagagcatttcttaACACACAACAATCAAACCttaaagcagatgagctacagcagcagcagaagaagagcaCACTGTTGATATTCCTGACATTAACAACAGccaactgaggctacagttcacacagaCTCAACAAATTTGGACAATCGAAAGCCAGCAAAGGTTGTGTGGTGTCTGCTGTGACGTTTGGATATCTGATTTAGAGTTTGACCTGAACAACATggaagcatgaatccatcctgcctcaTCATATCATTGGTTCAGGCTGCTGCAGTTTAATAGTTTGAGGAATAACTTCTTGACTGATTCCTTGACTTTCTTGATTGT
>TCONS_00012879
AGACTGGCTCTGAGCACTACACGATGATGAAGGATTATTGTAGGTTAATCTGCTTGCCTGCCATCTGCCTGTTCCAAACAAATTAAACCTGAAAGCAAAGCCACACTCACAAATGTAGATGAAGctttGAACAATCACtatctgcagaagagcatttcttaACACACAACAATCAAACCttaaagcagatgagctacagcagcagcagaagaagagcaCACTGTTGATATTCCTGACATTAACAACAGccaactgaggctacagttcacacagaCTCAACAAATTTGGACAATCGAAAGCCAGCAAAGGTTGTGTGGTGTCTGCTGTGACGTTTGGATATCTGATTTAGAGTTTGACCTGAACAACATggaagcatgaatccatcctgcctcaTCATATCATTGGTTCAGGCTGCTGCAGTTTAAT
>TCONS_00013818
CGCTGCAATCaatcgtctgatctcggagcgctttcgcggtactttgatgccacgtgtgacagtcacgtggcgtccgCGCGCGGCGCGCAGCGTCAATCCGGACATTTCTAACCTCAGACgtatttcgatcgatctgcgcacgTTCAACTTGACAATGTTCAACATGTGACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGgtCTGCCAGTCTCTGGAGCTGCACTTTCTCCATATCTGGAAGATTCTTTGGATCTTGGCCTGTAAGTTTTCTCACCCAGGGTGACCCAACACAAGGCGGTTTTGGAGCAAGTCAGAGAGACGCATCTCGTTTCAGACGTGTGAAAGGGCCAGCTGGGGAGGGCTGGACACATTGTGATCACTCACCTTCATCCTTAATTTGTTGTCATTACCTTTACGAGCATTTCAAGATCAAAAACAAGCAGAGAGGGAGGACTGCCATGTGACAGAGTAGGATTGAGGGCTTCGGCGGCAAAGTGAAGAGTCATTTTGGATACCCTCTGTTTCATTATGTCTTTCATTATCTCAGTTAGTGATGAACAACACCCTCTTTCCTACCCAACATGCTCTCCTCTTGTGCCACTCCTCACTGTCTGTAGAGCTTtatgaaatcttttttttgttaGATGAAATGCAATTTAGTTATCAAAAACCATGTCAACTAAATTGAAATCCTGGAACATGTTCAATTAAATAacagtttatgtataaacaaaatgTAAGTATTAGGGTCTGTttacatatcgtcaccttagaattataaggttctatctgacatttttgtcgaAACTGAGATATTGACGTATTCTTAttaaacttatttacattataggatgtttttttaataagttgtttacattttaagactttttattaaaaaaacaaatgttac
>TCONS_00013819
CAGTTGCTCAGACGCTGCACGCTGCAATCaatcgtctgatctcggagcgctttcgcggtactttgatgccacgtgtgacagtcacgtggcgtccgCGCGCGGCGCGCAGCGTCAATCCGGACATTTCTAACCTCAGACgtatttcgatcgatctgcgcacgTTCAACTTGACAATGTTCAACATGTGACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGACAGTGATCCTTTGCTTCAGGAGGCCTTTTGATCAGAGGGCCATGCCTAACATCAGATGGAGGACACTTGATACCAGACAGAGGAGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGgtCTGCCAGTCTCTGGAGCTGCACTTTCTCCATATCTGGAAGATTCTTTGGATCTTGGCCTGTAAGTTTTCTCACCCAGGGTGACCCAACACAAGGCGGTTTTGGAGCAAGTCAGAGAGACGCATCTCGTTTCAGACGTGTGAAAGGGCCAGCTGGGGAGGGCTGGACACATTGTGATCACTCACCTTCATCCTTAATTTGTTGTCATTACCTTTACGAGCATTTCAAGATCAAAAACAAGCAGAGAGGGAGGACTGCCATGTGACAGAGTAGGATTGAGGGCTTCGGCGGCAAAGTGAAGAGTCATTTTGGATACCCTCTGTTTCATTATGTCTTTCATTATCTCAGTTAGTGATGAACAACACCCTCTTTCCTACCCAACATGCTCTCCTCTTGTGCCACTCCTCACTGTCTGTAGAGCTTtatgaaatcttttttttgttaGATGAAATGCAATTTAGTTATCAAAAACCATGTCAACTAAATTGAAATCCTGGAACATGTTCAATTAAATAacagtttatgtataaacaaaatgTAAGTATTAGGGTCTGTttacatatcgtcaccttagaattataaggttctatctgacatttttgtcgaAACTGAGATATTGACGTATTCTTAttaaacttatttacattataggatgtttttttaataagttgtttacattttaagactttttattaaaaaaacaaatgttac
>TCONS_00013820
CGCTGCAATCaatcgtctgatctcggagcgctttcgcggtactttgatgccacgtgtgacagtcacgtggcgtccgCGCGCGGCGCGCAGCGTCAATCCGGACATTTCTAACCTCAGACgtatttcgatcgatctgcgcacgTTCAACTTGACAATGTTCAACATGTGACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGcgaTTGGCCATTAGTCTCTGCCAATATGTTCAGCAAAACTCTCTTCGAAATGTAATGAAGACGATTGGCTGGCCTTCAGGGACAAATATGTTCCGTTTCCAAACTTCAGGTAGGCACAGGCTATAGGATT
>TCONS_00013821
ctttatttaatccggggtcgccacagcagaatgaaccaccgacttatccagtacattttacgcagcggatgcttatccagctgcaacccatctctgggaaattgAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGTGTGTCTGCAGGGAGCTGAAGCAGGCAGGTCTGAAATCAGAGCCTATGAGGacagacacacatacagtacactgatGTCTCCCTCAGTCCCAGCAGCCTGAGTCTCTCTCAAGCGCATGGATGATTACAGTGAGTGCAGGCCCACCGATCCCATGGTGCTGGAACAAATACTGGATACCCGGCTACAGGCTTGACCGTTGCTCTGAAAGGCTACAGTCTTCTTCATCATGCCTTGGTCGGCCCGATAAGCCAAGGTTTTCACATTTTATGGTTTTGcagagacactttttttttttggcatttctgGCATGAAGCACTGGTTGAGATAAGACATGGCAAAAGAGAAAGTAACACTTTTCAACAGTATATCTCTTTAAAAAG
>TCONS_00013822
CGCTGCAATCaatcgtctgatctcggagcgctttcgcggtactttgatgccacgtgtgacagtcacgtggcgtccgCGCGCGGCGCGCAGCGTCAATCCGGACATTTCTAACCTCAGACgtatttcgatcgatctgcgcacgTTCAACTTGACAATGTTCAACATGTGACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGTGTGTCTGCAGGGAGCTGAAGCAGGCAGGTCTGAAATCAGAGCCTATGAGGacagacacacatacagtacactgatGTCTCCCTCAGTCCCAGCAGCCTGAGTCTCTCTCAAGCGCATGGATGATTACAGTGAGTGCAGGCCCACCGATCCCATGGTGCTGGAACAAATACTGGATACCCGGCTACAGGCTTGACCGTTGCTCTGAAAGGCTACAGTCTTCTTCATCATGCCTTGGTCGGCCCGATAAGCCAAGGTTTTCACATTTTATGGTTTTGcagagacactttttttttttggcatttctgGCATGAAGCACTGGTTGAGATAAGACATGGCAAAAGAGAAAGTAACACTTTTCAACAGTATATCTCTTTAAAAAG
>TCONS_00013823
CGCTGCAATCaatcgtctgatctcggagcgctttcgcggtactttgatgccacgtgtgacagtcacgtggcgtccgCGCGCGGCGCGCAGCGTCAATCCGGACATTTCTAACCTCAGACgtatttcgatcgatctgcgcacgTTCAACTTGACAATGTTCAACATGTGACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGGTTAGTCACTATCTCCATTGATGGCAATTCCATTTAATAACACTGTTGGGGGCGTTAATTATGCTGAGGGCTCAGGCCAGCCTGTTTCAGGCTGCTGCTAATGCAGGCCCTATGTTGCATCTGTGGGGCTCCAGCCCTCCGGATCACCGCAGACAAAGACCTTTGTCGTTTTCAGGTGAATGGCTGGGCTTGCCAGCAGGTCCAT
>TCONS_00013824
TCGCCGCTCCAGCAGTTGCTCAGACGCTGCACGCTGCAATCaatcgtctgatctcggagcgctttcgcggtactttgatgccacgtgtgacagtcacgtggcgtccgCGCGCGGCGCGCAGCGTCAATCCGGACATTTCTAACCTCAGACgtatttcgatcgatctgcgcacgTTCAACTTGACAATGTTCAACATGTGACTGAAACATTTGCCTTTTATCAGTTGATTTCCTAAAACCACTTCATCTCgcctgtgttgttttatttttgagtcTTTAGACTATTGTCAGTGACTCTCTCCTttgggattgttttttttttgcacatctgAATGGATTGTTTTGGAGAAGTGAGCGAGTCTGACTGTTGTGAGAGGGGGATGATCACACCGCGATAATTCGACTGACTAAGAAGTTCCTGCTTCAATGACTTTGTCCCACGGAGGGATGTGACTTCCAGACCCCTCAGATTGATTGTTTACTTGGAAGCTGAGGGAGGAGAGCATCTAGTTGTTTCCCAAGTATCTGTGGAACTGGAGTTAGCTGGACTGTAACAATGGACTTTTCTTCTTTTACCTGAAGCGGCGTTCAAAAGCACATGTTGTTCTTTATGCTTGAGGATTGTTGCTACAACACACATTTGTGAATCGGAATTGATGAAAAAGTAACAAAGCGGCTCTGTTGTGGCAGGATGAAAGGCCGGTGAGAACACTGGGGTTTTCTGCTCAATAAATATGATGCTTTCTCATACTACAACTCTTTGTCACTGACAAAGAGCAAACAGCTGGTAGATGAAATGCTACATTGCAGCACAGGACAACAGACATTTTCAGCTTGGCTGACCAGACACTAGCCTTTGAGCTGGCTCTGCGAAGGCTGTTTGTTTGACCCAAAGGAGTGGAATTGACAGTAAAAGCCTGCAGCACTTTTTCCTCTTCTATGACTAAGACGGCAAATGATTTTTCCAGTTCCCTGTGTGAGGTGCTGTGTTTTTGCTAGCTCTCTCATGACTGCATTACACCTGCTGCACTTGTTGACTCAATTCTGCTTATTTCATCTTTTAAAGCACGACACCGCAGGTGAATAAACCGTGAACTAATAGTGAATCTCAATAGTTGAaacccaaaggaaaatgaataaatattacaaactttCTGAAATGTTGTGTAAATATGCAAGTTaggcattatttaattaaatatgcaccAATTTGCATCTATTTCTAGTACAACTGAGCATTCAATTAAGCCAGGTTTAAAATTCCTTTTTAAAGGAATTTATTCCTTTTTTAACTATTGGATGTATCAGAGTCTGCagttttttgatgttgttgttgttttgctgagGTGATctcttcttttattattcagttattcagaaaataatgcaaaaaaatctgagaaaaaaacACAGGtcacttttttttgtagtttacaaTGCTGTATATCAGACAAATTATGTATGAACAAATCTTTCTGTAAAAGCATCCAGAATATACTATAGATATGAATACGTTTgggtgtacactcaaaaaattgccatgtttgctgtttgttcaaaccacgcatttaaaatgagctgaaacaacatgatTCTTGAGGGTTTTTAGTACAACttaaacttaaatttgtaaaaaaaaaaataaaaaaataaaaaaatatctaataagctaacttaattccttcatgttgtcccaacacaaatctttgcatggaacccagcatttttacactgTATGCAAAGTGGAGATTTAGTGCAGCAGAAATAATaacagattaataataaaaaaaaaaagataattgtgCACCGATAGCCTCATGGTCTGTGCGGTCACTGTGCTTCAGCGTTccaagttcgaatcccggcttacAGACCTTTGCTATTCCCtttccgc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093614

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012880 False 938 lncRNA 0.43 5 29506613 29701742
TCONS_00012879 False 426 processed_transcript 0.42 2 29506660 29507601
TCONS_00013818 False 1298 lncRNA 0.42 5 29588411 29701910
TCONS_00013819 False 1403 lncRNA 0.42 6 29588411 29701929
TCONS_00013820 False 717 lncRNA 0.45 4 29602160 29701910
TCONS_00013821 False 751 lncRNA 0.47 4 29610096 29684966
TCONS_00013822 False 968 lncRNA 0.46 4 29610096 29701910
TCONS_00013823 False 792 lncRNA 0.47 4 29635299 29701910
TCONS_00013824 True 1893 lncRNA 0.39 4 29640580 29701941

Neighbor

gene id symbol gene type direction distance location
XLOC_006677 cdhr1a coding downstream 667 29480010 ~ 29505946 (-)
XLOC_006676 rgra coding downstream 50754 29446226 ~ 29455859 (-)
XLOC_006675 slc18a3a coding downstream 82159 29422049 ~ 29424454 (-)
XLOC_006674 chata coding downstream 85282 29406814 ~ 29421331 (-)
XLOC_006673 C13H10orf53 coding downstream 100079 29404218 ~ 29406534 (-)
XLOC_006679 NA coding upstream 7404 29709345 ~ 29803009 (-)
XLOC_006680 NA coding upstream 235454 29937395 ~ 29942962 (-)
XLOC_006681 hif1an coding upstream 250692 29952633 ~ 29980215 (-)
XLOC_006682 NA coding upstream 282936 29984877 ~ 29985502 (-)
XLOC_006683 wnt8b coding upstream 289149 29991090 ~ 30006260 (-)
XLOC_006471 BX537274.2 misc downstream 19241708 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 28680388 825904 ~ 826225 (-)
XLOC_006672 NA non-coding downstream 276678 29224992 ~ 29229935 (-)
XLOC_006671 NA non-coding downstream 656719 28827293 ~ 28849894 (-)
XLOC_006670 NA non-coding downstream 760036 28743798 ~ 28746577 (-)
XLOC_006668 NA non-coding downstream 787383 28677121 ~ 28719230 (-)
XLOC_006665 NA non-coding downstream 934149 28546412 ~ 28572464 (-)
XLOC_006689 NA non-coding upstream 543732 30245673 ~ 30250564 (-)
XLOC_006690 NA non-coding upstream 847468 30549409 ~ 30551509 (-)

Expression


Co-expression Network