XLOC_006680


Basic Information

Item Value
gene id XLOC_006680
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 29937395 ~ 29942962 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013486
TGAGGATGCGTCCATCAGCCTGCACCGTCTCCTCCATCACAGGACACCTGAGtgcctcccacagccgctgcttgatctccaGGCCCAGCTGAAGGCTGTAGGGACGACTCTTGATCATGGGCTCGACCACAGAGCGGTAGATGTCCTGGTAGGCCTGAACGCTGTAGCCATGGATAGAGAGGGGCTCCTCCTGCTGTCCCACGTCCACTGAAGGCACTGAGGATGCTGGACGGATTTGGGGAAGGACAGCTGCGTTCTTCAGGTGATGTTCCTCCAGACCTGGGGAAGAGATACAGCTGTAAGTATGATCCAACCTGATCACAGCTGCAGGATCCTGAACAGACGGGACACCCTCCAGCAGGAAGTCCTTCAGGTGTGCTGGAAGACTCCTGATTCGTCTGAGGCGCCGCTGCTCCATGAATATCAACTTTCCAAATCAGACAATCTGATGAAACTTGTCAAAGGGAAGAGATACAGCTGTAAGTATGATCCAACCTGATCACAGCTGCAGGATCCTGAACAGACGGGACACCCTCCAGCAGGAAGTCCTTCAGGTGTGCTGGAAGACTCCTGATTCGTCTGAGGCGCCGCTGCTCCATGAATATCAACTTTCCAAATCAGACAATCTGATGAAACTTGTCAAAGTGAAGAGTTGAAAGAGCTCAAGTGATCAGATTCAGAGAGATGTGTTGAtttcagtgtaaactcaggttgccgtggtgacagaatattggagtcatttaaatgtaaacaacacttgaTCAGCAGAAAGTCAATCAGAGCAGTAGAGGAGTTCTTCTCTATTGCTTCTCTATTACACattgtgtcatttttacattataaataagtaaatatagtgTGAACTAAACAAAATGTGTAATACAGAAACGTTAACACTTTcagttaaatttgattaaaatcagTTGGGGTAAGCAGATAtcctgataattattattattatctttt

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013486 True 966 lncRNA 0.46 2 29937395 29942962

Neighbor

gene id symbol gene type direction distance location
XLOC_006679 NA coding downstream 134386 29709345 ~ 29803009 (-)
XLOC_006678 NA coding downstream 235454 29506613 ~ 29701941 (-)
XLOC_006677 cdhr1a coding downstream 431449 29480010 ~ 29505946 (-)
XLOC_006676 rgra coding downstream 481536 29446226 ~ 29455859 (-)
XLOC_006675 slc18a3a coding downstream 512941 29422049 ~ 29424454 (-)
XLOC_006681 hif1an coding upstream 9671 29952633 ~ 29980215 (-)
XLOC_006682 NA coding upstream 41915 29984877 ~ 29985502 (-)
XLOC_006683 wnt8b coding upstream 48128 29991090 ~ 30006260 (-)
XLOC_006684 scdb coding upstream 64592 30007554 ~ 30028103 (-)
XLOC_006685 trmt2b coding upstream 90074 30033036 ~ 30034754 (-)
XLOC_006471 BX537274.2 misc downstream 19672490 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 29111170 825904 ~ 826225 (-)
XLOC_006672 NA non-coding downstream 707460 29224992 ~ 29229935 (-)
XLOC_006671 NA non-coding downstream 1087501 28827293 ~ 28849894 (-)
XLOC_006670 NA non-coding downstream 1190818 28743798 ~ 28746577 (-)
XLOC_006689 NA non-coding upstream 302711 30245673 ~ 30250564 (-)
XLOC_006690 NA non-coding upstream 606447 30549409 ~ 30551509 (-)
XLOC_006691 NA non-coding upstream 625605 30568567 ~ 30571143 (-)
XLOC_006693 CT025887.1 non-coding upstream 689143 30632105 ~ 30632219 (-)

Expression


Co-expression Network