G7903


Basic Information

Item Value
gene id G7903
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10074476 ~ 10074868 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU8719
GCATCCTGACAGCAGCTGGAGGTTCCTGAGCAATCCCTTCGCTGTCAGCCTCACATGGATGTTGGACAGAGAGAATTTGGGAGAGAAAAACATCTTGCCGAAAAAAATAGAGAAGAACTCTTTATAAGCAAAACAAAAAAAGTCTCAATTCGCACACATATTGCTAAAGCAAAAAATATATCTGCCAAACAAGCGGCAAATAATGTGACGAAGGGAGGGGGAAGAAAAAAATCTGTCTCTACCCCCGTCACACTTTAGCAGCCTGGATTAAAGAGGGGTAGGAGCCCCTGAGACAAATGAGGCAGAGCAGAAGGCATTAATCCACTGTTTTGAGCTCTCGTCCACTGGCGCTCAGCATCTCTCGCTCTCTGCTGGGTGCTAAGGAGGTGCAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU8719 True 393 lncRNA 0.47 1 10074476 10074868

Neighbor

gene id symbol gene type direction distance location
CI01000000_09913788_09975299 NA coding downstream 98309 9913659 ~ 9976167 (-)
CI01000000_09530735_09630567 PCDH1B coding downstream 443909 9530735 ~ 9630567 (-)
CI01000000_09506970_09508416 NA coding downstream 565150 9506292 ~ 9509326 (-)
CI01000000_09469075_09494668 NA coding downstream 578496 9469020 ~ 9495980 (-)
CI01000000_09451613_09452011 NA coding downstream 622290 9450612 ~ 9452186 (-)
CI01000000_10096840_10101549 PDGFRL coding upstream 21856 10096724 ~ 10101758 (-)
CI01000000_10106854_10121986 SLC7A2 coding upstream 31789 10106657 ~ 10123017 (-)
CI01000000_10151976_10164598 NA coding upstream 77067 10151935 ~ 10164862 (-)
CI01000000_10168220_10187727 MICU3B coding upstream 93255 10168123 ~ 10187937 (-)
CI01000000_10217060_10219305 NA coding upstream 141967 10216835 ~ 10219305 (-)
G7898 NA non-coding downstream 14112 10046845 ~ 10060364 (-)
G7875 NA non-coding downstream 53860 10020350 ~ 10020616 (-)
G6747 NA non-coding downstream 164203 9863351 ~ 9910273 (-)
G6691 NA non-coding downstream 243901 9830101 ~ 9830575 (-)
G6681 NA non-coding downstream 260612 9813527 ~ 9813864 (-)
G7904 NA non-coding upstream 1771 10076639 ~ 10076867 (-)
G7905 NA non-coding upstream 6347 10081215 ~ 10081449 (-)
G7906 NA non-coding upstream 6940 10081808 ~ 10082020 (-)
G7907 NA non-coding upstream 7821 10082689 ~ 10082980 (-)
G7879 NA non-coding upstream 28642 10103510 ~ 10104754 (-)
G3931 NA other downstream 3670951 6157013 ~ 6403525 (-)
G3716 NA other downstream 4073707 6000407 ~ 6000769 (-)
G3650 NA other downstream 4533595 5540463 ~ 5540881 (-)
CI01000000_05465020_05466303 NA other downstream 4607960 5464058 ~ 5466516 (-)
G2730 NA other downstream 5684324 4386383 ~ 4390152 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other upstream 329460 10407395 ~ 10409950 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other upstream 749543 10824324 ~ 10825464 (-)
G8125 NA other upstream 965401 11040269 ~ 11040909 (-)
G8699 NA other upstream 3210456 13272585 ~ 13311429 (-)
G9036 NA other upstream 3651932 13726800 ~ 13727090 (-)

Expression


Co-expression Network