G7924


Basic Information

Item Value
gene id G7924
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 10221012 ~ 10222274 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU8744
ACAAAATCCACATATTTACACATGCTGAAAATTTACACAATTCACAGTCTATTGTCCCAGTCTTTGAGAAGCTATATGCAAGGACATGATCTTCTACCAAGGTCTCCAGACAGAGTCACAGATCATAACAGGTTGCTTAGGACTTGAAGTCATGGTGGGAGCAGACAAGACAGTTATTTGTGCAAGTTTTGCGCAGCCAGATGGTGTGCAAGAATTGCTCAGTTGGACATGAGTGAGATGTTGCTGTGTTGGATCCTCATACAGATGCACCTGAGTTTCTCTGTGGGATAATGGAGAATGCAGCATTGGGTGTGATTTGTGCAGGTTTTCACATGTTTTTTCCACTCCCTTCCCATACTCATGGCTTTTGCTAGCAATAAAATGGCTGACTCGTAAGAGACATGTCCTCATTCCATCTCGGTAGCTCTGACGTTTGCAAGGTGAGCTCAGGTCTTCATCATACTCCTCAGTGCGTGCCCTTTTTCCTCTAGTGATTTGAAAAGGGTCATTCCCTGATCCTTGTTCAGCTCTTAGGAAGTGCACAACACTTTCCAGGATTTCAGCCTTTTCCACTTTAGGGTTTTTTAGTTTCTCATTGTGTGTATTCTCAAGTAATAGCGTTCTCAAAGTTTCTAGGCTTTGATTAATGCGATCTCTCCTCCTTTTCTCCATGAGAGGTTTTGGGACCCGTCTCGAGTCTTTTTGTTCCGGTATATCAACAGCCTGTTTGCTCATTTTGGCGATTCACCAGATTCCCTCCAAACTGAGATTATGAGCATCATTTTGGAGTTCACGTCACTTATGGTACGCCGTCTCTCCTCATAATGAATAATAAAAGAAGACGGACCAATCGCGTGTGTCCCTGAGCTAGCCCCCTCATTAATAATCACATGCGTACTGGATGAAAGAGACAATGCCTAATGCCGATTGTGAAGTAAGAGCCAATAATGACCCATTTAGCCCCCCACTGGGATGTTTAAACGGTGGCTATTCAGTTAAGGTATTGCCAAAGATTATCAAAGAAGGTTTGATTCATTCACATGCGTTGTGTTTAAAAGAACCACTGAAAGGCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU8744 True 1073 lncRNA 0.53 3 10221012 10222274

Neighbor

gene id symbol gene type direction distance location
CI01000000_10217060_10219305 NA coding downstream 1707 10216835 ~ 10219305 (-)
CI01000000_10168220_10187727 MICU3B coding downstream 33075 10168123 ~ 10187937 (-)
CI01000000_10151976_10164598 NA coding downstream 56150 10151935 ~ 10164862 (-)
CI01000000_10106854_10121986 SLC7A2 coding downstream 97995 10106657 ~ 10123017 (-)
CI01000000_10096840_10101549 PDGFRL coding downstream 119254 10096724 ~ 10101758 (-)
CI01000000_10227326_10228613 PFD6, PFDN6 coding upstream 4900 10227174 ~ 10228617 (-)
CI01000000_10235386_10236012 NA coding upstream 13004 10235278 ~ 10236047 (-)
CI01000000_10244575_10245714 TMEM265 coding upstream 21956 10244230 ~ 10246265 (-)
CI01000000_10279478_10285178 NPAS4, NPAS4A coding upstream 56981 10279255 ~ 10286261 (-)
CI01000000_10304021_10312933 EFEMP2A, EFEMP2, FBLN4 coding upstream 81558 10303832 ~ 10312933 (-)
G7884 NA non-coding downstream 71932 10147499 ~ 10149080 (-)
G7879 NA non-coding downstream 116258 10103510 ~ 10104754 (-)
G7907 NA non-coding downstream 138032 10082689 ~ 10082980 (-)
G7906 NA non-coding downstream 138992 10081808 ~ 10082020 (-)
G7905 NA non-coding downstream 139563 10081215 ~ 10081449 (-)
G8016 NA non-coding upstream 122668 10344942 ~ 10345496 (-)
G7946 NA non-coding upstream 146746 10369020 ~ 10371147 (-)
G8028 NA non-coding upstream 211747 10434021 ~ 10434286 (-)
G7968 NA non-coding upstream 363323 10585597 ~ 10589211 (-)
G7991 NA non-coding upstream 482625 10704899 ~ 10719278 (-)
G3931 NA other downstream 3817487 6157013 ~ 6403525 (-)
G3716 NA other downstream 4220243 6000407 ~ 6000769 (-)
G3650 NA other downstream 4680131 5540463 ~ 5540881 (-)
CI01000000_05465020_05466303 NA other downstream 4754496 5464058 ~ 5466516 (-)
G2730 NA other downstream 5830860 4386383 ~ 4390152 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other upstream 182054 10407395 ~ 10409950 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other upstream 602137 10824324 ~ 10825464 (-)
G8125 NA other upstream 817995 11040269 ~ 11040909 (-)
G8699 NA other upstream 3063050 13272585 ~ 13311429 (-)
G9036 NA other upstream 3504526 13726800 ~ 13727090 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007355 her5 coding NC_007125.7 CM002898.2 30543008 ~ 30544666 (+)