XLOC_006685 (trmt2b)


Basic Information

Item Value
gene id XLOC_006685
gene name trmt2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30033036 ~ 30034754 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012887
GTCGCGCGCCGTTTCATGGaaatgtttttaagttgttttgtgcACACGGAAAAAGGTAGAGAGAACAATATTTGtttaaacaaattgtttacatatttatgcTCAGAGACAGACTATATCCAAAACACCAACGTGAAACATAATTTGACTGCAGCGTTTTTGTCACTTGATAGAGTGAAGAAGTACACTTAAGATTCCACCAATGTCGTCTGCATTTAAAGCAATGCGTTTACATTTAACCTGCCCATTGCCGAAACAAGTCATTAATATACCCCAAACACTCTTTAGTTATTTAATAACAAATCAACGTGCTATCAATAACAGCTGCAAACCGGTGAAAACAAGCAACGCAAAGAAACCAAAACTTCCAACTACCAAACTCTCTTGGGAAGAAAGACTGTCAGACACTGTGACTCCTCTGTGGAGAATGACTTATGAGGATCAGCTTCAATGGAAATACGAGCATCAGAAGAAGATCCTACTTAAGATGATGAAGGAACTGTCTCAGGATCCAACACGTGCTTTTTCAGACCACTTAAACTTCCCTTTGCTTCCCATTGTAGCTTCACCGGTGAGAGATGGATACCGCAACAAATCCACCTTCTCTGTCAACAAAGGAATCGATGGGAATCCGAAAACTCTCGGATTCTACATTGGCACAGGAAAAGCGGGTAACATTGTATGCGTCCATGCTGATCATCTCCTGAGCATCCCTTCAAAACACAAAATGGTTGCAAGGTGCTATGAAGATTTTATACGCCTCTCACCGCTCAGGCCGTGCATCTTATTTGACGACGGCGGTCACTGGAGAGAAATCACAATAAGAACCAACTCCACCGGCCACACCATGGCTATAGTGTACTTTCATCCTCAATCTCTGACGCCTGAGGAGACAGACATCCATAAAGCTGCTCTGGTGGAGTATTTTACACAAGGTCCCGGAGCAATTTGCCAGCTGGACTCCCTTTACTTTCAGGAGACCACAATGACCCGTTGCAGTCATGAACAATCCCAGTATCAGCTTCTATATGGACAGACTCATATATATGAGGAGGTGCTCGGATTTAAGTTTCGTATTTCTCCTGATTCTTTCTTCCAGGTGAATCGGGAAGCAGCGGAGGCTTTGTATAAGACTGTGGCAGAGCTCAGTCAGCCTTGTGTTGGTGGCACCCTGCTGGATGTCTGTTGTGGCACTGGAGCCATCGGAATTTCGTTATCACCACAGATGGAGAGAGTCATTGGGATAGAGCTCATTGAGCAAGCAGTGGAGGATGCCAAGTTTAATGCAGCACTAAACAGAGTTTGTAATTGTGAATTTCTTGCAGGCAAAGCGGAAGTTGTTTTGCCAGATCTGATGGGAAGTTTGAGTTCTGATGGAGGCCTGACAGCCGTTGTCAATCCCTCCAGGGCTGGTTTGCATTATCGGGTGGTCCGAGCTTTGAGGAACCACTCAGCCATAAGAAGGCTTGTTTATATTTCATGTAAACCAGACGGGGAGGCGATGAGGAACTTTAGAGAGCTCTGCTGTAGTGTAGGTTTGGTTAGAAGAATCACTGGAGAAGCCTTCAAACCAGTCGTGGCTGTGCCTGTAGACCTGTTTCCACACACTCCTCACTGTGAACTGGTGCTTGTGTTTGAGCGATAAATGGATAGTGTTTTTGTAAAAGTGTTTGTGTACATATTTATGTCATTAAATGTCAATGCTAAATTGTCACTGCA

Function

symbol description
trmt2b Predicted to enable S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT2B (tRNA methyltransferase 2 homolog B).

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0005575 cellular_component cellular_component
GO:0030697 S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-050809-101 Predicted to enable S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT2B (tRNA methyltransferase 2 homolog B).

Ensembl:

ensembl_id ENSDARG00000033967

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012887 True 1719 mRNA 0.44 1 30033036 30034754

Neighbor

gene id symbol gene type direction distance location
XLOC_006684 scdb coding downstream 4933 30007554 ~ 30028103 (-)
XLOC_006683 wnt8b coding downstream 26776 29991090 ~ 30006260 (-)
XLOC_006682 NA coding downstream 47534 29984877 ~ 29985502 (-)
XLOC_006681 hif1an coding downstream 52821 29952633 ~ 29980215 (-)
XLOC_006680 NA coding downstream 90074 29937395 ~ 29942962 (-)
XLOC_006686 tysnd1 coding upstream 100921 30135675 ~ 30143127 (-)
XLOC_006687 sar1ab coding upstream 110183 30144937 ~ 30150592 (-)
XLOC_006688 ppa1b coding upstream 117463 30152217 ~ 30161684 (-)
XLOC_006689 NA coding upstream 210919 30245673 ~ 30250564 (-)
XLOC_006690 NA coding upstream 514655 30549409 ~ 30551509 (-)
XLOC_006471 BX537274.2 misc downstream 19768131 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 29206811 825904 ~ 826225 (-)
XLOC_006679 NA non-coding downstream 230027 29709345 ~ 29803009 (-)
XLOC_006678 NA non-coding downstream 331095 29506613 ~ 29701941 (-)
XLOC_006672 NA non-coding downstream 803101 29224992 ~ 29229935 (-)
XLOC_006691 NA non-coding upstream 533813 30568567 ~ 30571143 (-)
XLOC_006693 CT025887.1 non-coding upstream 597351 30632105 ~ 30632219 (-)
XLOC_006698 NA non-coding upstream 774209 30808963 ~ 30812183 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G74824 NA non-coding CI01000012 null 9474304 ~ 9475994 (-)
bowfin (Amia calva) G68317 NA non-coding CM030128.1 CM030128.1 4083763 ~ 4083964 (+)