LOC122359395 (LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341)


Basic Information

Item Value
gene id LOC122359395
gene name LOC107750114,LOC107701289,LOC107702996,LOC107720420,LOC107570341
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 7957364 ~ 7958415 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU154176
CGGGGTTTATGGGCTTCTCCTGCAAGGCTGTGAGGAGATGTGCCGAGATCCGCTGCGATGAAGACCAGCGGTGCTGCACCCagaacagcagcagcatcaCGTCCGTCCGCCAGCTCCCGCTGCACACCTTCCTGGACAACCTGGAGTGGACGGTCCGTAAGCTGTCGGGACTGCTGATTCTGCTCTTGCTCTTCGTGGTGGGTTATTTCATTCAGCGTGTCGTATGTCCGCGTCCCCGCCGCCAGACGCCCGAGGAGCCGGCCCTTCTGCACGGACACGCGTCCCAGGACTCCC
>XM_043259686.1
ACAGGCATTTGCTGTGTTCTTCGTGCGAGAGCATCAGGAGGGCTGTTTAGTTTGAGTTGGTTCTGGCTATAATGACTCCATTGAAACCCACAGAGAAACAGTgccatgcatttttaatcaggTGGCTTCTGAGGTCGCGTGCTCCACTCCGAGGATGTGAATTATGAGCCACGGTGGGATGAAAACTGAACCGATCCGACGGAAAGACAATGACATTACCTCACGACGGGAAGAGagtgattttattacattattacactGTCGTTTTCAATTCCAATAAGTGAGTGCCAGAACTCTTCTCTCGCCCGGCATTGTCCCTGCATGAGAAGAGAAATATCTCAGCACCTTCACTGAAGCTCTTGATGGTAGAAGCATGAGAACGCGGACGTTGCTGAGCGTTGCGTCGGGGTTTATGGGCTTCTCCTGCAAGGCTGTGAGGAGATGTGCCGAGATCCGCTGCGATGAAGACCAGCGGTGCTGCACCCagaacagcagcagcatcaCGTCCGTCCGCCAGCTCCCGCTGCACACCTTCCTGGACAACCTGGAGTGGACGGTCCGTAAGCTGTCGGGACTGCTGATTCTGCTCTTGCTCTTCGTGGTGGGTTATTTCATTCAGCGTGTCGTATGTCCGCGTCCCCGCCGCCAGACGCCCGAGGAGCCGGCCCTTCTGCACGGACACGCGTCCCAGGACTCCCTCGCCGGGGACTTCGGCTCCCCGGGGCCGCTGCTTCCCACGTACGAGGAGGTCAATTATCTGCCCACATACGAGGAGATCATGATGGAGGTGAATGGAGACCATCTGGACTCGAACACGGGAGCGGTGGAGGAAAGACGAGCAGCACTGCAGACGTCTAGAAGACCCATAAACTCTCTGTAATCCACTCCCTGTGTGTCTTTAGGAGCTCTAGACTCCTCAAGACATTTTCAGGTTTGGCTCTTACAGTAAGTATCTCGAACTAACCAGACTTAGTGCAAATTGTGTGCAAAAATGCGTTTAGTCTTCTTAAACATTGTTGATTATAATTCTTCATTGAATTGCTGCTCTTTTT

Function

NR:

description
PREDICTED: uncharacterized membrane protein C3orf80-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154176 False 294 TUCP 0.63 1 7957768 7958061
XM_043259686.1 True 1052 mRNA 0.52 1 7957364 7958415

Neighbor

gene id symbol gene type direction distance location
il12a NA coding upstream 24275 7927733 ~ 7933089 (+)
schip1 schip1,LOC107703018,LOC107720449,LOC107570343,LOC107701301,LOC108424074,LOC107750091,LOC107551285,LOC103369651,LOC100701131,LOC107081925 coding upstream 29769 7822250 ~ 7927595 (+)
mfsd1 mfsd1,LOC107720448,LOC107750088,LOC107703000 coding upstream 139267 7808452 ~ 7818097 (+)
gfm1 gfm1 coding upstream 152007 7791327 ~ 7805357 (+)
mlf1 mlf1,LOC107750090 coding upstream 166753 7781489 ~ 7790611 (+)
smc4 smc4,LOC107720450,LOC107570344 coding downstream 21440 7979855 ~ 7995444 (+)
LOC122358565 LOC107579791 coding downstream 41926 8000341 ~ 8008542 (+)
LOC122358567 LOC107750096,LOC107551283,LOC107688059,LOC100002960 coding downstream 51514 8009929 ~ 8011875 (+)
LOC122359455 vstm5 coding downstream 55830 8014245 ~ 8017625 (+)
cep295 NA coding downstream 66091 8024506 ~ 8038603 (+)
G104404 NA non-coding upstream 798 7956086 ~ 7956566 (+)
G104380 NA non-coding upstream 157510 7797551 ~ 7799854 (+)
LOC122359244 NA non-coding upstream 209011 7746974 ~ 7748353 (+)
G104350 NA non-coding upstream 443050 7513640 ~ 7514314 (+)
G104197 NA non-coding upstream 796753 7159909 ~ 7160611 (+)
G104418 ift80,LOC107702995 non-coding downstream 19780 7978195 ~ 7979208 (+)
G104431 NA non-coding downstream 117284 8075699 ~ 8076248 (+)
G104436 NA non-coding downstream 193281 8151696 ~ 8151922 (+)
LOC122359019 NA non-coding downstream 368469 8326884 ~ 8330253 (+)
G104447 NA non-coding downstream 393919 8352334 ~ 8370846 (+)
igsf10 LOC107750112,LOC107551235,LOC107720411,LOC107572519,LOC107680809,LOC107703022,LOC107720412 other upstream 194791 7752245 ~ 7762573 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122,LOC107662593,LOC107551237 other upstream 332920 7621699 ~ 7624444 (+)
G104361 NA other upstream 337526 7619062 ~ 7619838 (+)
G104349 NA other upstream 381932 7572362 ~ 7575432 (+)
LOC122359599 NA other upstream 433443 7523820 ~ 7523921 (+)
G104466 cyp2y3 other downstream 442896 8401311 ~ 8417464 (+)
LOC122358505 clca4,LOC107749648,LOC107758746,LOC107678237,LOC107577085,LOC107678235 other downstream 670445 8628860 ~ 8633971 (+)
LOC122358602 LOC107749646,LOC107678243,LOC107560621,LOC107577085 other downstream 789388 8747803 ~ 8752818 (+)
LOC122358603 LOC107749646,LOC107678243,LOC107560621,LOC107758746,LOC107561373,LOC107577085 other downstream 797912 8756327 ~ 8761416 (+)
LOC122358919 armc9,LOC107668662,LOC107668488,LOC107720734 other downstream 1294093 9252508 ~ 9280469 (+)

Expression


Co-expression Network