XLOC_006687 (sar1ab)


Basic Information

Item Value
gene id XLOC_006687
gene name sar1ab
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30144937 ~ 30150592 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012890
ATTGGTTAATTTTCGAGGATTCGTGTTTCTTCTCTCTGTCCTAAAgacaaaacatgaacattttggTCGTTTTGTAACGCAGTGTTTTGCCTGCTTACGATAGATTTAGGGAGCTAGCTGCAAAAATGTCCTTCATATTTGATTGGCTGTACAGAGGGTTCAGCAATGTGTTACAATTATTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTTGGATTAGACAATGCAGGAAAGACGACATTACTGCACATGCTCAAAGATGATCGACTTGGGCAGCATGTTCCAACACTTCACCCCACATCTGAAGAACTGAGTATTGCTGGGATGACTTTCACTACATTCGACCTGGGTGGTCATGCTCAAGCAAGAAGGGTTTGGAGAAATTACCTTCCGGCAATAAATGGCATAGTGTATCTCGTTGACTGTGCTGACCACGAACGCCTACAAGAAGCCAAAATTGAGTTGGATGCCCTCTTAACCGATGAAACAATCTCCAATGTGCCAATTCTTATTTTGGGGAATAAAATTGACCGTCCTGAAGCGATTAGCGAGGACGCATTAAGAGGAATGTTTGGTCTTTATGGACACACCACTGGAAAGGGGAATGTATCACTGAAAGAACTCAACCTAAGGCCGATGGAAGTCTTTATGTGCAGTGTGTTGAAAAGACAAGGATATGGTGAAGGATTTAGATGGCTTTCTCAGTATATTGATTagaatatttaattgtttattcatttaaaaccCATGCATccttatttattaaatgattatttagCTTGTAATGAAACTATAAGAAGAAGGGGTGGTATATATATAATCTGAATCTATAAAATCCAGTTTAGTGACAGGTAAGCAttagcttaaaaaaaaactaaagtaataCTTAGATAAGGTAATTGTTGCTGTTCTTTTTCTAAAAGCAGGGTAAGAAATATACTAGGCTCTAACTGTTGACAAGGTGGggttatttaaagacattgcatcCTGTTACAAAACACCTTTTTTACACCAGTGTTAGTTTATACCCTGCCCAATGTTAAACGAACCTTTGTATATTGAAATCAAGAACATTAAATCAGGTGAATATCACTTGTGCTGTAAAATTCTGACAGAATCAgtgttattgtttttatacattacATTACCTCAGTGCCTTAATGCTGGTGATTTTTGTTTTCCTATAGTTCTGTATTTCCCATAATTTCAACTGAATTGCCAATGTATGCATATATGCTTGCTTATCAAACTTGCCTTGAGATATACAGTAACACACCTTATGTTTAAAAGgacaaatgtctgatttgtaTGTAACATTTTGATACTTTTAAGATCGGGGCGGATGTAGCATGTTTCAGTGCTGTGTCTACACTGTCCTTTTTCAACACTAAACTACCTGCAGTGAGTACTTTTTGATTGTCAGCTGTGATGTATTTGCAGCTGTGGCATGAGAGTACGTAGGCTATGTGTGCAATAGAAAAATGTGTCGTATTACTAAGTCAATTTTACTCCTACTTGTAAATAGGCTTATATGAATGGTTTGGGATTTTCAGTGCTGCTTATGTTTTGAAATGGCTAATTCTGTACATTCTATTGGGAGCACTTTGTAGAGTTTATGCTCTTAGGTTcgcaatattaaaaacaaatattttg
>TCONS_00012891
AGTTCCGGTGAAACGTCAAATTCGGGCTGCTGTTTTTAACAGCTGAACACAGACCGGACTGACAGGTCTACAACACAAGCGGAGCCTTTCAGGGAGCTAGCTGCAAAAATGTCCTTCATATTTGATTGGCTGTACAGAGGGTTCAGCAATGTGTTACAATTATTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTTGGATTAGACAATGCAGGAAAGACGACATTACTGCACATGCTCAAAGATGATCGACTTGGGCAGCATGTTCCAACACTTCACCCCACATCTGAAGAACTGAGTATTGCTGGGATGACTTTCACTACATTCGACCTGGGTGGTCATGCTCAAGCAAGAAGGGTTTGGAGAAATTACCTTCCGGCAATAAATGGCATAGTGTATCTCGTTGACTGTGCTGACCACGAACGCCTACAAGAAGCCAAAATTGAGTTGGATGCCCTCTTAACCGATGAAACAATCTCCAATGTGCCAATTCTTATTTTGGGGAATAAAATTGACCGTCCTGAAGCGATTAGCGAGGACGCATTAAGAGGAATGTTTGGTCTTTATGGACACACCACTGGAAAGGGGAATGTATCACTGAAAGAACTCAACCTAAGGCCGATGGAAGTCTTTATGTGCAGTGTGTTGAAAAGACAAGGATATGGTGAAGGATTTAGATGGCTTTCTCAGTATATTGATTagaatatttaattgtttattcatttaaaaccCATGCATccttatttattaaatgattatttagCTTGTAATGAAACTATAAGAAGAAGGGGTGGTATATATATAATCTGAATCTATAAAATCCAGTTTAGTGACAGGTAAGCAttagcttaaaaaaaaactaaagtaataCTT

Function

symbol description
sar1ab Predicted to enable GTPase activity. Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; intracellular protein transport; and regulation of intracellular transport. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SAR1A (secretion associated Ras related GTPase 1A).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0003400 regulation of COPII vesicle coating biological_process
GO:0070863 positive regulation of protein exit from endoplasmic reticulum biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0061024 membrane organization biological_process
GO:0016050 vesicle organization biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0070971 endoplasmic reticulum exit site cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-437 Predicted to enable GTPase activity. Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; intracellular protein transport; and regulation of intracellular transport. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Orthologous to human SAR1A (secretion associated Ras related GTPase 1A).

Ensembl:

ensembl_id ENSDARG00000033320

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012890 False 1658 mRNA 0.36 7 30144937 30149973
TCONS_00012891 True 876 mRNA 0.39 7 30145702 30150592

Neighbor

gene id symbol gene type direction distance location
XLOC_006686 tysnd1 coding downstream 1810 30135675 ~ 30143127 (-)
XLOC_006685 trmt2b coding downstream 110183 30033036 ~ 30034754 (-)
XLOC_006684 scdb coding downstream 116834 30007554 ~ 30028103 (-)
XLOC_006683 wnt8b coding downstream 138677 29991090 ~ 30006260 (-)
XLOC_006682 NA coding downstream 159435 29984877 ~ 29985502 (-)
XLOC_006688 ppa1b coding upstream 1625 30152217 ~ 30161684 (-)
XLOC_006689 NA coding upstream 95081 30245673 ~ 30250564 (-)
XLOC_006690 NA coding upstream 398817 30549409 ~ 30551509 (-)
XLOC_006691 NA coding upstream 417975 30568567 ~ 30571143 (-)
XLOC_006692 zcchc24 coding upstream 428668 30579260 ~ 30645965 (-)
XLOC_006471 BX537274.2 misc downstream 19880032 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 29318712 825904 ~ 826225 (-)
XLOC_006680 NA non-coding downstream 201975 29937395 ~ 29942962 (-)
XLOC_006679 NA non-coding downstream 341928 29709345 ~ 29803009 (-)
XLOC_006678 NA non-coding downstream 442996 29506613 ~ 29701941 (-)
XLOC_006672 NA non-coding downstream 915002 29224992 ~ 29229935 (-)
XLOC_006693 CT025887.1 non-coding upstream 481513 30632105 ~ 30632219 (-)
XLOC_006698 NA non-coding upstream 658371 30808963 ~ 30812183 (-)

Expression


Co-expression Network