LOC122358545


Basic Information

Item Value
gene id LOC122358545
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10171862 ~ 10177828 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU155401
AGGTTCTCCTATCAATACTAGCACCGCGCTGTTAAACAGAGAAAGCTTTGTCACTGAACGGGCATTATAAAGGGTTTCCGtggtaccatttttttttttatacttaattaGGCTGACAAAGAAGCCATGTTATGCAATAAATGTCAATCAAACGCATCACTGATGTCAGTGTGATCTCAACATGACACCAGTTTGACGTCTAAACTATGACATCCATCTGATGCGAGCTTAATGTCTAATGTCCTCACCTTTTTACAAATTTGAACTGAGCTCTTTGGCTGTGATTAGAGTAAGAAATGAATCGCAGAGCTCTCCGGCCGCAATTCAGTTGCAGAGCCatgcaatgaaaaacaaaccagtAAAACGCGGTTGTGACGCTGGGTGCATTTAAAGCAACCGCGGCGTGCCTCGTGAGGACGGGTTTCAGACTCCCGGAGCTGCGGCGCCGCCGAGACCCAACAGCGTGCGGCGAAGCGAAACTTAAACTCGGCAGACCCGTCCGACTCTAGACTACACCAACAAGACCTGAATATACTTGAAAGCGGCGCGTTAGCGTGGATATCTGGAGGACGAGAAGCGAATGCATTGCTATTTTCGTGATTGTTTATCTACGAACCTCATAGATATTGTATCGACCAACCCGTTTTATTCCTAAAAGAAGGCAACACAGGAATATCACCTGTAGCTTTCTACTGCGTCTCTGTTAAAAACCTTTCTTACCGGTTACACCCGCCCATATCGCAGTAGCTTCAGCTCCGACCGCTTCGGGGATGTTGATCGGGTTAAAGAGATCGGCTGTGAATATATAGCCGACCCGTCTCTGTTTCTCAAAAACGAAACTTAACTTCGGGCGGAAGAAACCGCTCGCATTGCAGTTGCTTCGGAATATTTCTAAACTTTAGTCAGTCAAAATTAGTTTCTGAGCTATTTTTTGTTTCTAGAATAGGCTGGTGTTGTGACATTGAAGGTACGATTGTCATGTTTGTTATGTTGACTTTAGTCTAAAGTTTAGAAATATTCCGAAGCAGAAATGTTCGATGCGAGCGGGTTCTTCTGCCCGAAGTCAAGTTTCGTTCACTATATATTCACAGCCG
>TU155402
AGGTTCTCCTATCAATACTAGCACCGCGCTGTTAAACAGAGAAAGCTTTGTCACTGAACGGGCATTATAAAGGGTTTCCGtggtaccatttttttttttatacttaattaGGCTGACAAAGAAGCCATGTTATGCAATAAATGTCAATCAAACGCATCACTGATGTCAGTGTGATCTCAACATGACACCAGTTTGACGTCTAAACTATGACATCCATCTGATGCGAGCTTAATGTCTAATGTCCTCACCTTTTTACAAATTTGAACTGAGCTCTTTGGCTGTGATTAGAGTAAGAAATGAATCGCAGAGCTCTCCGGCCGCAATTCAGTTGCAGAGCCatgcaatgaaaaacaaaccagtAAAACGCGGTTGTGACGCTGGGTGCATTTAAAGCAACCGCGGCGTGCCTCGTGAGGACGGGTTTCAGACTCCCGGAGCTGCGGCGCCGCCGAGACCCAACAGCGTGCGGCGAAGCGAAACTTAAACTCGGCAGACCCGTCCGACTCTAGACTACACCAACAAGACCTGAATATACTTGAAAGCGGCGCGTTAGCGTGGATATCTGGAGGACGAGAAGCGAATGCATTGCTATTTTCGTGATTGTTTATCTACGAACCTCATAGATATTGTATCGACCAACCCGTTTTATTCCTAAAAGAAGGCAACACAGGAATATCACCTGTAGCTTTCTACTGCGTCTCTGTTAAAAACCTTTCTTACCGGTTACACCCGCCCATATCGCAGTAGCTTCAGCTCCGACCGCTTCGGGGATGTTGATCGGGTTAAAGAGATCGGCTGTGAATATATAGCCGACCCGTCTCTGTTTCTCAAAAACGAAACTTAACTTCGGGCGGAAGAAACCGCTCGCATTGCAGTTGCTTCGGAATATTTCTAAACTTTAGTCAGTCAAAATTAGTTTCTGAGATATTTTTTGTCTCTAAAATAGGCTGGCGTTGTGACATTGAAGGTACGATTGTCATGTTGACACAGGGTTCCTCGGAATATCACCTGTAGCTTTCTGCTGCGTCTCTGTTAAAAACCTTTCTTACCGGTTACACCCGCCCATATCGCAGTAGCTTCAGCTCCGACCGCTTCGGGGATGTTGATCGGGTTAAAGAGATCGGCTGTGAATATATAGCCGACCCGTCTCTGTTTCTCAAAAACGAAACTTGACTTCGGGCAGAAGAAACCGCTCGCATTGCAGTTGCTTCGGAATATTTCTAAACTTTAGTCAGTCAAAATTAGTTTCTGAGCTATTTTTTGTCTCTAAAATAAGTTGGCGTTGTGACGTTGAAGGTACGATTGTCATGTTAGTTATGTTGACTTTAGTCTAAAGTTTAGAAATATTCCGAAGCAGAAATGTTCGATGCGAGCGGGTTCTTCTGCCCGAAGTCAAGT
>TU155403
AGGTTCTCCTATCAATACTAGCACCGCGCTGTTAAACAGAGAAAGCTTTGTCACTGAACGGGCATTATAAAGGGTTTCCGtggtaccatttttttttttatacttaattaGGCTGACAAAGAAGCCATGTTATGCAATAAATGTCAATCAAACGCATCACTGATGTCAGTGTGATCTCAACATGACACCAGTTTGACGTCTAAACTATGACATCCATCTGATGCGAGCTTAATGTCTAATGTCCTCACCTTTTTACAAATTTGAACTGAGCTCTTTGGCTGTGATTAGAGTAAGAAATGAATCGCAGAGCTCTCCGGCCGCAATTCAGTTGCAGAGCCatgcaatgaaaaacaaaccagtAAAACGCGGTTGTGACGCTGGGTGCATTTAAAGCAACCGCGGCGTGCCTCGTGAGGACGGGTTTCAGACTCCCGGAGCTGCGGCGCCGCCGAGACCCAACAGCGTGCGGCGAAGCGAAACTTAAACTCGGCAGACCCGTCCGACTCTAGACTACACCAACAAGACCTGAATATACTTGAAAGCGGCGCGTTAGCGTGGATATCTGGAGGACGAGAAGCGAATGCATTGCTATTTTCGTGATTGTTTATCTACGAACCTCATAGATATTGTATCGACCAACCCGTTTTATTCCTAAAAGAAGGCAACACAGGAATATCACCTGTAGCTTTCTACTGCGTCTCTGTTAAAAACCTTTCTTACCGGTTACACCCGCCCATATCGCAGTAGCTTCAGCTCCGACCGCTTCGGGGATGTTGATCGGGTTAAAGAGATCGGCTGTGAATATATAGCCGACCCGTCTCTGTTTCTCAAAAACGAAACTTAACTTCGGGCGGAAGAAACCGCTCGCATTGCAGTTGCTTCGGAATATTTCTAAACTTTAGTCAGTCAAAATTAGTTTCTGAGCTATTTTTTGTTTCTAGAATAGGCTGGTGTTGTGACATTGAAGGTACGATTGTCATGTTTGTTATGTTGACTTTAGTCTAAAGTTTAGAAATATTCCGAAGCAGAAATGTTCGATGCGAGCGGGTTCTTCTGCCCGAAGTCAAGTTTCGTTCACTATATATTCACAGCCGATCAACATCCCCGAAGCGGTCGGAGCTGAAGCTACTGCGATATGGGCGGGTGTAACCGGTAAGAAAGGTTTTTAACAGAGACGCAGCAGAAAGCTACAGGTGATATTCTGAGGAACCCTGTGTTGCCTTCTTGTTGTCTGCAGccactaaaatgtgtttttacaaaGAAGAGGAT
>TU155405
atttttatgaataatatttatgaatgtttacgaaaaagtattttaatgtttgttcaaCTGATTCTGAAATGTTCAGAGCAATCATAAGAATACTGATTTTAGTTCAATTTAAGGTCTAGTTCAACCTAAGCCACTTCTTTGATCAAACATTATGAGGTTGCCGTCACAAAAACCTCAATTTCAGGTTTAGTATAGCAAAAGTGAGAGATTTCatacaaatgttatatttgCAAATACTCAACTAGTTTGAGGGACATctgattgatttaaaaaatgtcgaTTGcgttacaaatacattttatgatcaTATTCTGAGAGCTCCCATATGTGTCCATAATGGGGTTGAAAACTATTAGTCTTCATATCTTAGAATAAtgaccaataataataattaaatatttcagtaatgcTGTGGGGTGTTCAGAAAAGTAATTCAGAGTAAAAGTAGTTCAGACTTTAGGGTAACAGGGTTGAAGATGGTAAT
>XR_006252623.1
TCAACATCCCCGAAGCGGTCGGAGCTGAAGCTACTGCGATATGGGCGGGTGTAACCGCCGATCAACATCCCCGAAGCGGTCGGAGCTGAAGCTACTGCGATATGGGCGGGTGTAACCGCCGATCAACATCCCCGAAGCGGTCGGAGCTGAAGCTACTGCGATATGGGCGGGTGTAACCGGTAAGAAAGGTTTTTAACAGAGACGCAGCAGAAAGCTACAGGTGATATTCCGAGGAACCCTGTGTTGCCTTCTTGTTGTCTGCAGccactaaaatgtgtttttacagagaAGAGGATTAATTCTTGAAAACCATAACTTGTgtacttcagaaaaaaacagctatttatgTTAAGCTGTAGTTGTCTCTTCAGCCCCATTACCATCTTCAACTCTAAAGTCTGAacctacatttttatgaataatatttatgaatgtttacgaaaaagtattttaatgtttgttcaaCTGATTCTGAAATGTTCAGAGCAATCATAAGAATACTGATTTTAGTTCAATTTAAGGTCTAGTTCAACCTAAGCCACTTCTTTGATCAAACATTATGAGGTTGCCGTCACAAAAACCTCAATTTCAGGTTTAGTATAGCAAAAGTGAGAGATTTCatacaaatgttatatttgCAAATACTCAACTAGTTTGAGGGACATctgattgatttaaaaaatgtcgaTTGcgttacaaatacattttatgatcaTATTCTGAGAGCTCCCATATGTGTCCATAATGGGGTTGAAAACTATTAGTCTTCATATCTTAGAATAAtgaccaataataataattaaatatttcagtaatgcTGTGGGGTGTTCAGAAAAGTAATTCAGAGTAAAAGTAGTTCAGACTTTAGGGTAACAGGGTTGAAGATGGTAATGGGGCTGAAGAGACAACTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155401 False 1094 lncRNA 0.45 2 10171862 10174746
TU155402 True 1398 lncRNA 0.45 2 10171862 10177012
TU155403 False 1269 lncRNA 0.45 2 10171862 10174921
TU155405 False 484 lncRNA 0.30 1 10177325 10177808
XR_006252623.1 False 912 lncRNA 0.39 3 10172957 10177828

Neighbor

gene id symbol gene type direction distance location
gdpd1 gdpd1,LOC107672421,LOC107554273,LOC107659934 coding upstream 78912 10086677 ~ 10092950 (+)
galnt17 wbscr17,LOC107714690,LOC107582595,LOC107727938,LOC107554251,LOC108411682 coding upstream 206186 9949393 ~ 9965676 (+)
flot2b flot2b,LOC107661103,LOC107727921,LOC106581211,LOC105011286 coding upstream 236406 9927268 ~ 9935456 (+)
p2rx8 LOC107672369 coding upstream 254750 9911656 ~ 9917112 (+)
mrm3a LOC107716545,LOC107582598,LOC107672374 coding upstream 324477 9844405 ~ 9847385 (+)
clptm1 clptm1,LOC107727917,LOC107715057 coding downstream 1438 10179266 ~ 10187171 (+)
relb LOC107715143,LOC107582588,LOC107701429,LOC107659928,LOC107727919,LOC107554269 coding downstream 12759 10190587 ~ 10199278 (+)
LOC122358538 NA coding downstream 60349 10238177 ~ 10241248 (+)
dhx40 dhx40,LOC107659925 coding downstream 109127 10286955 ~ 10299275 (+)
cltcb cltcb,cltc,LOC107554261,LOC107659923,LOC108443353 coding downstream 122512 10300340 ~ 10325420 (+)
G105199 LOC107582590,LOC107715485,LOC107701431 non-coding upstream 2150 10149962 ~ 10169712 (+)
G105225 NA non-coding upstream 39997 10129551 ~ 10131865 (+)
G105171 NA non-coding upstream 263944 9846835 ~ 9907918 (+)
G105168 NA non-coding upstream 327810 9843836 ~ 9844052 (+)
G105145 LOC107714397,LOC107672358 non-coding upstream 356472 9813991 ~ 9815390 (+)
G105242 NA non-coding downstream 44 10177872 ~ 10178226 (+)
G105395 NA non-coding downstream 158938 10336766 ~ 10337446 (+)
G105411 NA non-coding downstream 209655 10387483 ~ 10387744 (+)
G105413 NA non-coding downstream 213631 10391459 ~ 10391718 (+)
G105416 NA non-coding downstream 227191 10405019 ~ 10405333 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 61419 10093455 ~ 10110443 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other upstream 456173 9703426 ~ 9715689 (+)
G105011 NA other upstream 498517 9669634 ~ 9673345 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other upstream 547890 9588789 ~ 9623972 (+)
dhrs11b.1 dhrs11b,LOC107694033,LOC107592755,LOC107752375,LOC107582609,LOC107672392,LOC107758673 other upstream 619734 9549752 ~ 9552128 (+)
G105248 NA other downstream 27011 10204839 ~ 10207452 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other downstream 175333 10353161 ~ 10390600 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other downstream 544144 10721972 ~ 10728395 (+)
LOC122358628 NA other downstream 1192420 11370248 ~ 11372691 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 1849727 12027555 ~ 12030549 (+)

Expression


Co-expression Network