XLOC_006688 (ppa1b)


Basic Information

Item Value
gene id XLOC_006688
gene name ppa1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30152217 ~ 30161684 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012892
TGTCAATTCATAAATCAGACGCAATACATCACTTTTCGGTCTCTGCGCAATCTAGTCTCTGCGCATGCGCGATTTCCATAAGCACGGCGCCGCTGCTGTCCtgtctttacacacacacacagcctaccGGAATCAATACACACACCAGAGCGCCCAATATGAGCTTCTTAACTGAAGAAAGAGGAAACCCCAACACTTTGAGCTATAGGCTATACTTCAAGAACTCAGATGGAAAATATCTTTCACCATTCCATGACATCCCTATGTTTGCAGATGAAGCTCAGaACATTTTCCACATGGTTGTTGAAGTGCCAAGATGGACAAATGCAAAAATGGAGATTGCAACAAAAGACCCCCTGAACCCAATTAAGCAAGATGTCAAGAAGGGCAATTTGCGCTATGTGGCCAATGTTTTCCCCCATAAAGGCTATATTTGGAATTATGGAGCAATTCCTCAGACTTGGGAAGACCCCGGGCACAAAGACAATGACACGGGTTGCTGTGGTGACAATGACCCAATTGATGTCTGTGAAATCGGCAGCAAGGTGTGTAGTCGCGGAGATGTCATCAAAGTAAAAGTCCTGGGTGTTTTAGCAATGATTGATGAAGGTGAAACTGACTGGAAAGTTATTGCAATCAACGTTGATGACCCTGAGGCAAAGGACTTGAACAACATTAGCGACGTGAGGCGACACAAGCCAGGCTACCTCGAGGCAACAGTCGACTGGTTTAGGCGATACAAAGTACCTGATGGAAAACCTGAGAACCAGTTTGCATTCAACGGAGAGTTCAAAGACAAGGACTTTGCAATTGAGACAATCAAAGCCACCCATGGCTTCTGGAAGGCACTTCTCTCACAACAAACCAATGCTGGTGAATTAAACTGCAAGAACACCTGCGTCTCAGAGGGTAATAGTCCATTCTGCTGTTCAGCCGATGAAGCCAAAGCAGTTGTTGATGGAtcaTGCGCTTGCGGAGATGCCAGTCCAATTCCAACCTCAGttgACAAGTGGTTCTATTATGCGAAGAACTAAAGAAGACAACACTGCGAAAGGACCAGTCTGATCATGAGACTATTAGGATATGTATGTCAGGAACTGTTGAGTATAATGGATATTTTAGAGAAAAACAGGGGCACTTCACTTCTTATTTGAGAGCTGAGTCTCGTATTAGAGCAACAGTTGTAGGAGCTAACCAGCGTCTCGTTAAGTTGTTTTTGATAATGGTTAGAGATTCTTtgtaacatttactaatgttagTTAACAGTCTGGTGGCACTCAGGTActgtacaattctgaacaaatgCTTTAATAAAGCTATTCTCATATGAC
>TCONS_00012893
cacacagcctaccGGAATCAATACACACACCAGAGCGCCCAATATGAGCTTCTTAACTGAAGAAAGAGGAAACCCCAACACTTTGAGCTATAGGCTATACTTCAAGAACTCAGATGGAAAATATCTTTCACCATTCCATGACATCCCTATGTTTGCAGATGAAGCTCAGaACATTTTCCACATGGTTGTTGAAGTGCCAAGATGGACAAATGCAAAAATGGAGATTGCAACAAAAGACCCCCTGAACCCAATTAAGCAAGATGTCAAGAAGGGCAATTTGCGCTATGTGGCCAATGTTTTCCCCCATAAAGGCTATATTTGGAATTATGGAGCAATTCCTCAGGTAAGGCTTTTATTTAAACATTGATCATACATTAAACACAGTATAAGACAGTATAATACAGTGCAATACATAAGCATTAAAAGGCATGGTAACTTTTAGTTTAAATACTAATTCTCACTATGAACTAGTGGCTTATGTTGGCTGGTTATTAGTAcctataaagtacatattctgcatgattttattgtccatccctaatcctacctaatatctaaacccaactactaccgctactaaagggtcacgaaacaccaaaacacattttttgagatgttgccagtcatatatgtgtcccacgttactaaaaacactattagggtacatgtatttaacaaaaaagtgaaaattggttgtttttgcgttatttcgagcaaattcgttcttacagtttgaaaattaattttgaagctacgtcacggccatgagatccttgtgtaaattccagtgtgtagactgc

Function

symbol description
ppa1b Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human PPA1 (inorganic pyrophosphatase 1).

GO:

id name namespace
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004427 inorganic diphosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-375 Predicted to enable inorganic diphosphatase activity and magnesium ion binding activity. Predicted to be involved in phosphate-containing compound metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human PPA1 (inorganic pyrophosphatase 1).

Ensembl:

ensembl_id ENSDARG00000030441

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012892 False 1331 mRNA 0.44 11 30152217 30161684
TCONS_00012893 True 800 lncRNA 0.37 4 30158461 30161569

Neighbor

gene id symbol gene type direction distance location
XLOC_006687 sar1ab coding downstream 1625 30144937 ~ 30150592 (-)
XLOC_006686 tysnd1 coding downstream 9090 30135675 ~ 30143127 (-)
XLOC_006685 trmt2b coding downstream 117463 30033036 ~ 30034754 (-)
XLOC_006684 scdb coding downstream 124114 30007554 ~ 30028103 (-)
XLOC_006683 wnt8b coding downstream 145957 29991090 ~ 30006260 (-)
XLOC_006689 NA coding upstream 83989 30245673 ~ 30250564 (-)
XLOC_006690 NA coding upstream 387725 30549409 ~ 30551509 (-)
XLOC_006691 NA coding upstream 406883 30568567 ~ 30571143 (-)
XLOC_006692 zcchc24 coding upstream 417576 30579260 ~ 30645965 (-)
XLOC_006693 CT025887.1 coding upstream 470421 30632105 ~ 30632219 (-)
XLOC_006471 BX537274.2 misc downstream 19887312 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 29325992 825904 ~ 826225 (-)
XLOC_006682 NA non-coding downstream 166715 29984877 ~ 29985502 (-)
XLOC_006680 NA non-coding downstream 209255 29937395 ~ 29942962 (-)
XLOC_006679 NA non-coding downstream 349208 29709345 ~ 29803009 (-)
XLOC_006678 NA non-coding downstream 450276 29506613 ~ 29701941 (-)
XLOC_006672 NA non-coding downstream 922282 29224992 ~ 29229935 (-)
XLOC_006698 NA non-coding upstream 647279 30808963 ~ 30812183 (-)

Expression


Co-expression Network