G105601 (LOC107713465,LOC107717180,LOC107597510)


Basic Information

Item Value
gene id G105601
gene name LOC107713465,LOC107717180,LOC107597510
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 11180032 ~ 11185102 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU155987
GCTGCCATAGAGGTCCGCGTTAGAAGGTAGATATCCGTTAGACCACTGCGCGGAGGTGGCACACACGAAATTGCCGCCGCTGAAAGTCTCGGGTGGCATCATGTGCATCATCTGCTGATGATCGTAAGCATTCTCCATCGGGATGTTGACATTTTCGGTAAAGGCACGTGTCTGGAAATAGGGCTCTGGAGCTTGCATTCCAAAGACATCTAGGTGGGCTGCGGggaaaaacaggagaaaatgcTGGCTTGAGCACAGGAGAACATTTAAATTAGGCCAGCAAGACTTGAGATGATGTCACGAGACCATCAGCCAAACAGCTAAATCACATTTGAATAGTAGTTTATAAAAAGAGATCATGCACGGATCTGTAAGGAGCACCTATATAGATGTAGGTGCcattgttcttttatttatttgtttgttcttctCACACTTGTAAAGATAGAGCCGATGCCCGACGGTGTGGATGAAAAGGGGAGTATAGTCGCCGAAGACGAACGCATCTTTacgtaaaagaaaaaaagaaattgcgACTTACCAGACATATTGGCCTGAAAAGGAGGAAACCTCTGGAAGAACTACAGTGAAATACCCCAACGTCAGTTCTTTGCTCTATTATATGGGCAAGAACGAATTATTCACAAAAGTCTCAAAAAGTCTCGACAAAGTCACCTCAAAACACTCTCAGGACATACAATTATACAGTAATATAGCTAGGGATATTTTAGTTTGAGTTTTTCTCCCCTCATCCCTACTATTTAAAACCCCAAGAACTCAATGATTTGACAATGATTTGATTGCGCGATACTTTCAATTTGAATATTCAAAAGCTTCGTAAAAAGACTTATTTCTGAGTGAAATTCGCTATTACAGTGCATATAACAGCATCTCTTTTAATGGAATGTCGTGTTATTTCGCATTTTGACATCaaccaaatatatatttctaacattttatcACCCTTTTGGTGTTGATGATTGGAGTCTCCCTCAGAAGCACTATTTCTACTTTGCAGTGAGACACAAGGCACAAAAGGGCTTTTGCGAGCCGTGGCACACTGTGGAGGTCTTCAGCAATGGGTAGCcttatcaaaaaaaattaatatagcGTCCCGTGGGTCCcattttttgcagtattttaagaATTATTGAATTGGTGGGCGTGGCATATGATAGCAGCCATGTTTGTCGTTAGAACAATTGGGACGTCTGCTGAAGTGAAGTTGTTGCAGTGGAGAGAGATGCGAGGCGcgtgaatattaattaatagttagaattaaaaaaaaataattaattgagaGGTCGAGCAGGCAATCGCTGGAAACCAAAAGCCGGCTCGAATGAGATTCAAACAACGAACGGCGTTCGTAATAGTATCTATGCATTTCTTCTCTCCTCgtgttttttgattttaatgcaaCGCTTTAATTAATCGACGAATCATCTTCGCCTCAGCCTTAAAAACGCGTGAACGGGGTGCTGTTTGATGCCGGGTGGTGCTGATCTCAAACCCAGCCTCGCACACCTGACTGACTTCTGCTGAAACGGACTGGCTAAGAGCGGCGCGTTTACATTTCTTTACACCTTTGAAATCGCAACGCTGCTGTTAATTTATCGGATTTAAGCGGGAACGCGTTTAAGAGCGAACGCCGGAGTGAACGCAGGTGCTCTTTGTCTCAGGAGAGGAGCCCGAAAAAACGGCTCCGCGTTGGCGTGCAGCACGGGTTGGGGAAAAACGGGACAGTATCGACGCAGAACTGCTGAATAATTGGACGTTTAAGCGAGTTCTTAATAAACGCGTCTTCAAACGCCTCGGTTGGGTTTTATTCACACTGTGCCCAGTTGCTCCTTCGGCGTTTCGCTCCTCTGTGAAATCGTTTTGTCGTGTCAGTCCGCCGCTAAAAACAGACCTCGACTTATTTAAGCGATATTTTCTTACCGGCCCTCTTTATCAGCCACGTTTCTGAATATATACTTGATAAATCTAAGTGAAATCTCTTCAGAAAGCCTTGAAGCCGGGTCGAGGGGGAGGTTGAGGTAGACTGGTTGAATGGCGCCCCCTGGTGACTAAACCGGAGAAGGTCATTCATCGTACTATACGCTGCTCCGCTCATATAGGAATTTCAATTATAAgcagtttattttaagatgaGCGTACACATGTACGCAAACTCTTCACGTGCTTGAGTAAAAAAACAGACTAGGAAAAGACGTTGCTAGTGACTATGACTGTAAAACCATTGCAATCCATAGAAATCcgttttaaattaaagcacaGAATGAGTCCT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107713465

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155987 True 2290 lncRNA 0.43 2 11180032 11185102

Neighbor

gene id symbol gene type direction distance location
LOC122359111 pou2af1,LOC107582583,LOC107717181,LOC107713464,LOC107597594 coding upstream 7829 11162084 ~ 11172203 (+)
LOC122359106 LOC107582581,LOC107713463,LOC107701416,LOC107597512,LOC107717185,LOC107659920 coding upstream 41408 11135353 ~ 11138624 (+)
cadm1b cadm1b,LOC107713448,LOC107582575,LOC107662762,LOC107699904,LOC107748594,LOC108435304 coding upstream 151254 10882534 ~ 11028778 (+)
dixdc1a dixdc1a,dixdc1,LOC107713457,LOC107701411,LOC107699911,LOC107717189 coding upstream 507432 10663810 ~ 10672600 (+)
LOC122359094 LOC107713423,LOC107701398,LOC107597513,LOC107659919,LOC107717187 coding upstream 599351 10564489 ~ 10580681 (+)
LOC122358387 LOC107717180,LOC107597510,LOC107713465,LOC107582585 coding downstream 70221 11255323 ~ 11259381 (+)
LOC122358473 LOC107701401,LOC107713429,LOC107582582,LOC107659936,LOC107717183 coding downstream 106251 11291353 ~ 11297720 (+)
LOC122359584 NA coding downstream 192303 11377405 ~ 11379430 (+)
jam3a jam3a,LOC107699899,LOC107662760,LOC107597526,LOC107713445 coding downstream 372911 11558013 ~ 11566017 (+)
vps26b vps26b,LOC107582573,LOC107699898,LOC107748589,LOC107597524,LOC107713444 coding downstream 382288 11567390 ~ 11573448 (+)
LOC122359117 NA non-coding upstream 79605 11098854 ~ 11100427 (+)
G105550 ncam1b,LOC107713449 non-coding upstream 383655 10786021 ~ 10796377 (+)
G105546 NA non-coding upstream 394094 10779248 ~ 10785938 (+)
G105539 NA non-coding upstream 404679 10753433 ~ 10775353 (+)
G105526 si:ch211-247l8.8,LOC107597517,LOC108413672,LOC108441967,LOC108413998 non-coding upstream 483238 10692341 ~ 10696794 (+)
G105622 LOC107662753,LOC107729089,LOC107662756,LOC107717280,LOC107657263 non-coding downstream 144823 11329925 ~ 11330320 (+)
G105623 LOC107729090,LOC107662800,LOC107586245 non-coding downstream 145318 11330420 ~ 11331300 (+)
G105628 NA non-coding downstream 153163 11338265 ~ 11338933 (+)
LOC122358459 NA non-coding downstream 289326 11474428 ~ 11477539 (+)
G105650 NA non-coding downstream 370776 11555878 ~ 11556298 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 451637 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 789432 10353161 ~ 10390600 (+)
G105248 NA other upstream 972580 10204839 ~ 10207452 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 1069589 10093455 ~ 10110443 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other upstream 1464343 9703426 ~ 9715689 (+)
LOC122358628 NA other downstream 185146 11370248 ~ 11372691 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 842453 12027555 ~ 12030549 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other downstream 908855 12093957 ~ 12097646 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 1652480 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 2731471 13916573 ~ 13917262 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009125 NA non-coding NC_007126.7 CM002899.2 17751150 ~ 17754926 (-)
grasscarp (Ctenopharyngodon idella) G9136 NA non-coding CI01000000 null 14035245 ~ 14035575 (-)
grasscarp (Ctenopharyngodon idella) G225940 NA non-coding CI01000053 null 1812634 ~ 1818169 (+)
striped catfish (Pangasianodon hypophthalmus) G221681 NA non-coding NC_047608.1 CM018554.1 6867784 ~ 6870274 (-)
bowfin (Amia calva) AMCG00004429 NA misc CM030121.1 CM030121.1 49411207 ~ 49425182 (-)