tnfaip1 (tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816)


Basic Information

Item Value
gene id tnfaip1
gene name tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12093957 ~ 12097646 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU156396
TGAAGAACACTAAACTACCAGCGCTGTTTAACCACTTTGTAGATCGCTGCCTGAAAGAATTGCTGCTTTTTTTGGACGACAATGTTTTGGATGAAACGCGGCTTGAACATTAATGTGAACGTAACGCAAAAAGATTATCAAGAACTAACAACAGTtcctattttttaatttattcacctcattattttatcttctttttacttttttaggaAAACACTATGTTTTTGAACGGTAGTTACTAACCTAATCATAGAATGACATCTTGCCAAGATGAATTTGCCAAGAAGTACATTACTCCGTTTCTGCTAGCTGTACAGGATCATATACTCCGTTACAATCCTGCCTTATGCCTACATTAATCATCAAGTACTGTGATTTGATACAGAGGAAATCGCGTGTACGGACTTGGGGTGTTGTATTTGGGAAAATCGGGTTGTAGTGTTTGATTTTTGTCTggtaagataaaaaaatgtgtttttaatagttcATGATTGAATGAATGTGACCGAAAAAGTTTCCAGCTCTAGTTTTTTTGGCCATCGCCAAAACAATTTCTCAaacttaaaatcttttaaacaataaatctggtttatt
>TU156397
TGAAGAACACTAAACTACCAGCGCTGTTTAACCACTTTGTAGATCGCTGCCTGAAAGAATTGCTGCTTTTTTTGGACGACAATGTTTTGGATGAAACGCGGCTTGAACATTAATGTGAACGTAACGCAAAAAGATTATCAAGAACTAACAACAGTtcctattttttaatttattcacctcattattttatcttctttttacttttttaggaAAACACTATGTTTTTGAACGGTAGTTACTAACCTAATCATAGAATGACATCTTGCCAAGATGAATTTGCCAAGAAGTACATTACTCCGTTTCTGCTAGCTGTACAGGATCATATACTCCGTTACAATCCTGCCTTATGCCTACATTAATCATCAAGTACTGTGATTTGATACAGAGGAAATCGCGTGTACGGACTTGGGGTGTTGTATTTGGGAAAATCGGGTTGTAGTGTTTGATTTTTGTCTggtaagataaaaaaatgtgtttttaatagttcATGATTGAATGAATGTGACCGAAAAAGTTTCCAGCTCTAGTTTTTTTGGCCATCGCCAAAACAATTTCTCAaacttaaaatcttttaaacaataaatctggtttatttgtttattgctcatctttcatgtgttttttgtttgaattaaagtattttatttttatagtaactttaacagattttaaaagaGTAGTTCAAGCATTTATTGTCTTCAGTTCATGCAAGCtgtggatgagtttgtttcttcataggACCG
>TU156398
TGAAGAACACTAAACTACCAGCGCTGTTTAACCACTTTGTAGATCGCTGCCTGAAAGAATTGCTGCTTTTTTTGGACGACAATGTTTTGGATGAAACGCGGCTTGAACATTAATGTGAACGTAACGCAAAAAGATTATCAAGAACTAACAACAGTtcctattttttaatttattcacctcattattttatcttctttttacttttttaggaAAACACTATGTTTTTGAACGGTAGTTACTAACCTAATCATAGAATGACATCTTGCCAAGATGAATTTGCCAAGAAGTACATTACTCCGTTTCTGCTAGCTGTACAGGATCATATACTCCGTTACAATCCTGCCTTATGCCTACATTAATCATCAAGTACTGTGATTTGATACAGAGGAAATCGCGTGTACGGACTTGGGGTGTTGTATTTGGGAAAATCGGGTTGTAGTGTTTGATTTTTGTCTggtaagataaaaaaatgtgtttttaatagttcATGATTGAATGAATGTGACCGAAAAAGTTTCCAGCTCTAGTTTTTTTGGCCATCGCCAAAACAATTT
>XM_043258218.1
GGTTTAACCTGTTGCTGTTGTTCTTTCAAAGAAGAAGAACAATCAACCCTGTTCTGTTGTCACTGAAGGTAGAAGcgaaaagtgttttatttatctatttttgtaTATCTTCTACTTCTCATTAAATACGGTTGAAGCAGATCTGTGGAAGTGATCGAGTCCTCGGGTTCAGTCAAACGCCCACCAGTTACTGAAGATCAGTGGCATGTAGGTTTTGCCTCACTAGCAGCATTCACCACGGCCGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGCGGGACATGTCAGGAGAAAGCTGCCTGCACCAGCTTCAACCTCAAACCGGGCCCATTGTGTCCGTCTCTTCAGTGGCCTGCCCAAAGACTAACACCTGCACTTACCGCGGTGTCACCGGCAACAAGTACGTCCAGCTCAATGTCGGTGGAAATCTTTACTATTCCACACTGCAAGTGCTCACCCGACAGGACACCCTCCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACCGATAAGGAAGgttggATTCTAATAGATCGCTGTGGGAAACACTTTGGTTTGATTCTCGGCTATCTCCGTGATGGATTTGTGACCTTGCCCAAAAGCAGACAGGGCATCATGGAGCTCCTAGCAGAAGCCAAGTATTACCAGATGCAGGGATTGATAGACTTGTGCCAGAGGGCCCTGCAGGATAACGAAGAAAAGGCTTTGTGTGTTATCCCAGTCATAACATCTCCTAAAGAGGAAGAGAGGTTGATACAAGGCTGCGTAAGGCCTGTCGTAAAACTGCTTTACAACCGAGGTAACAACAAATATTCCTACACAAGCAACTCGGATGACAACCTGCTCAAGAATATCGAGTTGTTCGAGAAGCTGTCTCTGAGCTACAGCAGCCGCGTGCTCTTCATTAAAGACGTCATCGGAGACGAGATCTGCTGCTGGTACTTTTACGGACAGAGCCGTAAGATAGCGGAAGTCTGCTGCACGTCCATCGTGTACGCTACTGAGAAGAAGCAGACGAAGGTTGAGTTTCCAGAGGCGCGGATCTACGAGGAGACGCTAAATTCCCTGCTCTACGAGACTCTCCCGGTCCCAGATAACTCCCTGTTGGAGGCCACCCGCAGACGGAACAATTGTTGCTCACACAGCGAAGAGGAGGAGGCCGTGGAGCTGAGGGAGCGCGTGCGGCGCATTCACATTAAAAGATACAGCACTTATGACGACAGACCACTTGGACATTAGCCTAGCTGTGAATCcaagatgtttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcctctcATCTAGTGTCTCTGTTTTCACGTTGTCTGTGAAGAACACTAAACTACCAGCGCTGTTTAACCACTTTGTAGATCGCTGCCTGAAAGAATTGCTGCTTTTTTTGGACGACAATGTTTTGGATGAAACGCGGCTTGAACATTAATGTGAACGTAACGCAAAAAGATTATCAAGAACTAACAACAGTtcctattttttaatttattcacctcattattttatcttctttttacttttttaggaAAACACTATGTTTTTGAACGGTAGTTACTAACCTAATCATAGAATGACATCTTGCCAAGATGAATTTGCCAAGAAGTACATTACTCCGTTTCTGCTAGCTGTACAGGATCATATACTCCGTTACAATCCTGCCTTATGCCTACATTAATCATCAAGTACTGTGATTTGATACAGAGGAAATCGCGTGTACGGACTTGGGGTGTTGTATTTGGGAAAATCGGGTTGTAGTGTTTGATTTTTGTCTggtaagataaaaaaatgtgtttttaatagttcATGATTGAATGAATGTGACCGAAAAAGTTTCCAGCTCTAGTTTTTTTGGCCATCGCCAAAACAATTTCTCAaacttaaaatcttttaaacaataaatctggtttatttgtttattg
>XM_043258219.1
GTCAACGGGAGGCAGTAGACACTTATCACGGTTTAACCTGTTGCTGTTGTTCTTTCAAAGAAGAAGAACAATCAACCCTGTTCTGTTGTCACTGAAGATCTGTGGAAGTGATCGAGTCCTCGGGTTCAGTCAAACGCCCACCAGTTACTGAAGATCAGTGGCATGTAGGTTTTGCCTCACTAGCAGCATTCACCACGGCCGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGCGGGACATGTCAGGAGAAAGCTGCCTGCACCAGCTTCAACCTCAAACCGGGCCCATTGTGTCCGTCTCTTCAGTGGCCTGCCCAAAGACTAACACCTGCACTTACCGCGGTGTCACCGGCAACAAGTACGTCCAGCTCAATGTCGGTGGAAATCTTTACTATTCCACACTGCAAGTGCTCACCCGACAGGACACCCTCCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACCGATAAGGAAGgttggATTCTAATAGATCGCTGTGGGAAACACTTTGGTTTGATTCTCGGCTATCTCCGTGATGGATTTGTGACCTTGCCCAAAAGCAGACAGGGCATCATGGAGCTCCTAGCAGAAGCCAAGTATTACCAGATGCAGGGATTGATAGACTTGTGCCAGAGGGCCCTGCAGGATAACGAAGAAAAGGCTTTGTGTGTTATCCCAGTCATAACATCTCCTAAAGAGGAAGAGAGGTTGATACAAGGCTGCGTAAGGCCTGTCGTAAAACTGCTTTACAACCGAGGTAACAACAAATATTCCTACACAAGCAACTCGGATGACAACCTGCTCAAGAATATCGAGTTGTTCGAGAAGCTGTCTCTGAGCTACAGCAGCCGCGTGCTCTTCATTAAAGACGTCATCGGAGACGAGATCTGCTGCTGGTACTTTTACGGACAGAGCCGTAAGATAGCGGAAGTCTGCTGCACGTCCATCGTGTACGCTACTGAGAAGAAGCAGACGAAGGTTGAGTTTCCAGAGGCGCGGATCTACGAGGAGACGCTAAATTCCCTGCTCTACGAGACTCTCCCGGTCCCAGATAACTCCCTGTTGGAGGCCACCCGCAGACGGAACAATTGTTGCTCACACAGCGAAGAGGAGGAGGCCGTGGAGCTGAGGGAGCGCGTGCGGCGCATTCACATTAAAAGATACAGCACTTATGACGACAGACCACTTGGACATTAGCCTAGCTGTGAATCcaagatgtttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcctctcATCTAGTGTCTCTGTTTTCACGTTGTCTGTGAAGAACACTAAACTACCAGCGCTGTTTAACCACTTTGTAGATCGCTGCCTGAAAGAATTGCTGCTTTTTTTGGACGACAATGTTTTGGATGAAACGCGGCTTGAACATTAATGTGAACGTAACGCAAAAAGATTATCAAGAACTAACAACAGTtcctattttttaatttattcacctcattattttatcttctttttacttttttaggaAAACACTATGTTTTTGAACGGTAGTTACTAACCTAATCATAGAATGACATCTTGCCAAGATGAATTTGCCAAGAAGTACATTACTCCGTTTCTGCTAGCTGTACAGGATCATATACTCCGTTACAATCCTGCCTTATGCCTACATTAATCATCAAGTACTGTGATTTGATACAGAGGAAATCGCGTGTACGGACTTGGGGTGTTGTATTTGGGAAAATCGGGTTGTAGTGTTTGATTTTTGTCTggtaagataaaaaaatgtgtttttaatagttcATGATTGAATGAATGTGACCGAAAAAGTTTCCAGCTCTAGTTTTTTTGGCCATCGCCAAAACAATTTCTCAaacttaaaatcttttaaacaataaatctggtttatttgtttattg
>XM_043258220.1
AGTAGACACTTATCACGGTTTAACCTGTTGCTGTTGTTCTTTCAAAGAAGAAGAACAATCAACCCTGTTCTGTTGTCACTGAAGATCTGTGGAAGTGATCGAGTCCTCGGGTTCAGTCAAACGCCCACCAGTTACTGAAGATCAGTGGCATTCACCACGGCCGGGGAAATCAGACCCATCGTGTGCAGGGTGGTTATCTACCTACAGCGGGACATGTCAGGAGAAAGCTGCCTGCACCAGCTTCAACCTCAAACCGGGCCCATTGTGTCCGTCTCTTCAGTGGCCTGCCCAAAGACTAACACCTGCACTTACCGCGGTGTCACCGGCAACAAGTACGTCCAGCTCAATGTCGGTGGAAATCTTTACTATTCCACACTGCAAGTGCTCACCCGACAGGACACCCTCCTGAGATCCATGTTCAGCGGCAAGATGGAGGTGCTCACCGATAAGGAAGgttggATTCTAATAGATCGCTGTGGGAAACACTTTGGTTTGATTCTCGGCTATCTCCGTGATGGATTTGTGACCTTGCCCAAAAGCAGACAGGGCATCATGGAGCTCCTAGCAGAAGCCAAGTATTACCAGATGCAGGGATTGATAGACTTGTGCCAGAGGGCCCTGCAGGATAACGAAGAAAAGGCTTTGTGTGTTATCCCAGTCATAACATCTCCTAAAGAGGAAGAGAGGTTGATACAAGGCTGCGTAAGGCCTGTCGTAAAACTGCTTTACAACCGAGGTAACAACAAATATTCCTACACAAGCAACTCGGATGACAACCTGCTCAAGAATATCGAGTTGTTCGAGAAGCTGTCTCTGAGCTACAGCAGCCGCGTGCTCTTCATTAAAGACGTCATCGGAGACGAGATCTGCTGCTGGTACTTTTACGGACAGAGCCGTAAGATAGCGGAAGTCTGCTGCACGTCCATCGTGTACGCTACTGAGAAGAAGCAGACGAAGGTTGAGTTTCCAGAGGCGCGGATCTACGAGGAGACGCTAAATTCCCTGCTCTACGAGACTCTCCCGGTCCCAGATAACTCCCTGTTGGAGGCCACCCGCAGACGGAACAATTGTTGCTCACACAGCGAAGAGGAGGAGGCCGTGGAGCTGAGGGAGCGCGTGCGGCGCATTCACATTAAAAGATACAGCACTTATGACGACAGACCACTTGGACATTAGCCTAGCTGTGAATCcaagatgtttatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcctctcATCTAGTGTCTCTGTTTTCACGTTGTCTGTGAAGAACACTAAACTACCAGCGCTGTTTAACCACTTTGTAGATCGCTGCCTGAAAGAATTGCTGCTTTTTTTGGACGACAATGTTTTGGATGAAACGCGGCTTGAACATTAATGTGAACGTAACGCAAAAAGATTATCAAGAACTAACAACAGTtcctattttttaatttattcacctcattattttatcttctttttacttttttaggaAAACACTATGTTTTTGAACGGTAGTTACTAACCTAATCATAGAATGACATCTTGCCAAGATGAATTTGCCAAGAAGTACATTACTCCGTTTCTGCTAGCTGTACAGGATCATATACTCCGTTACAATCCTGCCTTATGCCTACATTAATCATCAAGTACTGTGATTTGATACAGAGGAAATCGCGTGTACGGACTTGGGGTGTTGTATTTGGGAAAATCGGGTTGTAGTGTTTGATTTTTGTCTggtaagataaaaaaatgtgtttttaatagttcATGATTGAATGAATGTGACCGAAAAAGTTTCCAGCTCTAGTTTTTTTGGCCATCGCCAAAACAATTTCTCAaacttaaaatcttttaaacaataaatctggtttatttgtttattg

Function

symbol description
tnfaip1 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in negative regulation of Rho protein signal transduction; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human TNFAIP1 (TNF alpha induced protein 1).

NR:

description
BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU156396 False 594 lncRNA 0.34 1 12096904 12097497
TU156397 False 743 lncRNA 0.33 1 12096904 12097646
TU156398 False 554 lncRNA 0.35 1 12096904 12097457
XM_043258218.1 True 2001 mRNA 0.43 7 12093986 12097506
XM_043258219.1 False 1958 mRNA 0.43 8 12093957 12097506
XM_043258220.1 False 1920 mRNA 0.43 8 12093970 12097506

Neighbor

gene id symbol gene type direction distance location
supt5h LOC107586261,LOC107657557,LOC107662786,LOC107597543 coding upstream 70779 12011232 ~ 12023178 (+)
il15l NA coding upstream 84326 12001697 ~ 12009631 (+)
plekhg2 LOC107586265,LOC107662784,LOC107726101,LOC107729120,LOC107657556,LOC107597579 coding upstream 92397 11965423 ~ 12001560 (+)
spint2 LOC107726106,LOC107662785,LOC107586289 coding upstream 141830 11945085 ~ 11952127 (+)
zgc:112083 zgc:112083,LOC107726099,LOC107662779,LOC107729102 coding upstream 251333 11837084 ~ 11842624 (+)
sgsm2 sgsm2,LOC107729122,LOC107728220 coding downstream 989 12098635 ~ 12144191 (+)
ulk2 ulk2,LOC107662799,LOC107729108,LOC107717276,LOC107657566 coding downstream 117603 12215249 ~ 12243233 (+)
usf1 usf1,LOC107601709,LOC107657261,LOC107717282,LOC107586305,LOC107677518 coding downstream 293488 12391134 ~ 12397148 (+)
LOC122359162 gkup,LOC107709108,LOC107717281,LOC107657260,LOC107586304,LOC108436512 coding downstream 300115 12397761 ~ 12404693 (+)
ubash3bb ubash3bb,LOC107677523,LOC107709118,LOC107586242,LOC107601707,LOC107657259,LOC108436514,LOC108278382 coding downstream 307191 12404837 ~ 12418311 (+)
G105870 NA non-coding upstream 804 12091854 ~ 12093153 (+)
G105860 NA non-coding upstream 23094 12070299 ~ 12070863 (+)
G105819 exoc3l2b,LOC107662783,LOC107586290,LOC107729130,LOC107597542 non-coding upstream 190128 11901351 ~ 11903829 (+)
G105739 NA non-coding upstream 331268 11762395 ~ 11762689 (+)
G105736 NA non-coding upstream 338438 11753527 ~ 11755519 (+)
G105880 NA non-coding downstream 108762 12206408 ~ 12248991 (+)
G105890 NA non-coding downstream 154243 12251889 ~ 12252728 (+)
G105901 NA non-coding downstream 171985 12269631 ~ 12270174 (+)
G105900 LOC107662752,LOC107729106,LOC107657569,LOC107597581,LOC107717279,LOC107586288 non-coding downstream 172770 12270416 ~ 12274350 (+)
G105902 NA non-coding downstream 177006 12274652 ~ 12275410 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 63408 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 721266 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 1365562 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 1703357 10353161 ~ 10390600 (+)
G105248 NA other upstream 1886505 10204839 ~ 10207452 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 739936 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 1818927 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 1859551 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 2815265 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 3608867 15706513 ~ 15712439 (+)

Expression


Co-expression Network