G105910 (LOC107586245,LOC107709114,LOC569025)


Basic Information

Item Value
gene id G105910
gene name LOC107586245,LOC107709114,LOC569025
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12366246 ~ 12381713 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU156455
CACTACAGAcctgcacagacacacatgtCGAGCCCTTCACTTCAATGCTGTATTTGGCAGGAACGTTCTGCAGCTGTTTCTCCTGGTACAGTAACTTGTTGTCCCGATTGACATCAAAGTGGTGAGTGTCTTCTGCTGACTGTACAGTCACTGTGCTGGAGCCGTCAGAGCTGAACACTTTGGTGGCGTACAAAGACAGAGCCTGAAGAGCCACCACTGTGCTGGAGCCGTCAGAGCTGAACACTTTGGTGGCGTACAAAGACAGAGCCTGAAGAGCCACCAC
>TU156456
CTCAATCTGAGAGACCAGAGAACTGGGAGAGTTACTaaaagaaggaaagagaacaGAAGGAGCCCTTTCCAACAGCAGCTAACATCTAGATCCATGATGATGAGTGATCATGTGACTAACAGGAACGCCTCTTTTAAAAGATACACAATGACACGATCATCTTTAGAATCAAGACGCTCCACAAGTGATATTCTTGAAAGCCTTTGAGTTTCAAgctgtgtgaaaaaaatattttaaaaaacaacaaatgtattatttggcACATACCAAGAACTGAACCAGACAATATATCCCATCTTATTCATCTAATGATGAATAATTTTACAGTGAAACACACCATTGATGTATCAGCTGTGAATCCTGATAAGAGTTTAATATCCACAATGACCATGTTAGATCTTGCCTGTGGACCATGATGTCTGGAAAAGGGAAAATACGAACAATAAAAATTAacgctgaataaaataaaagccataAAGTTACTGTTCTTACTTGACAGTGAAATTTAGCAGTAGGGACTGTCCAAAGGTTTTCTTGCAATCTCCCTCGATCTTAGCATCAATGCTTAATGTTTTAGCTTCAGTAGGAGTGGGAATGTTGTAGAACTGAGCCACCTGAGAgagtaaacacaaaaaaaaacacatttataaaccaCCTCACAGCAAAATATCAACAAACGCTAAGAAAAGAGTAGGACAAAGCGGGTGAAGCTGAACACACTACAGAcctgcacagacacacatgtCGAGCCCTTCACTTCAATGCTGTATTTGGCAGGAACGTTCTGCAGCTGTTTCTCTTGGTACAGTAACTTGTTGTCCTGATTGACATCAAAGTGGTGAGTGTCTTCTGCTGACTGTACAGTCACTGTGCTGGAGCCGTCAGAGCTGAACACTTTGGTGGCGTACAAAGACAGAGCCTGAAGAGCCACCAC

Function

NR:

description
receptor of activated protein C kinase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156455 False 283 lncRNA 0.52 2 12366246 12381713
TU156456 True 934 lncRNA 0.40 3 12376679 12381713

Neighbor

gene id symbol gene type direction distance location
ulk2 ulk2,LOC107662799,LOC107729108,LOC107717276,LOC107657566 coding upstream 123013 12215249 ~ 12243233 (+)
sgsm2 sgsm2,LOC107729122,LOC107728220 coding upstream 222055 12098635 ~ 12144191 (+)
supt5h LOC107586261,LOC107657557,LOC107662786,LOC107597543 coding upstream 343068 12011232 ~ 12023178 (+)
il15l NA coding upstream 356615 12001697 ~ 12009631 (+)
plekhg2 LOC107586265,LOC107662784,LOC107726101,LOC107729120,LOC107657556,LOC107597579 coding upstream 364686 11965423 ~ 12001560 (+)
usf1 usf1,LOC107601709,LOC107657261,LOC107717282,LOC107586305,LOC107677518 coding downstream 9421 12391134 ~ 12397148 (+)
LOC122359162 gkup,LOC107709108,LOC107717281,LOC107657260,LOC107586304,LOC108436512 coding downstream 16048 12397761 ~ 12404693 (+)
ubash3bb ubash3bb,LOC107677523,LOC107709118,LOC107586242,LOC107601707,LOC107657259,LOC108436514,LOC108278382 coding downstream 23124 12404837 ~ 12418311 (+)
nkapd1 zgc:162339,LOC107717266,LOC107657245,LOC107601701,LOC107670955,LOC107709109,LOC107586236 coding downstream 219452 12601165 ~ 12603760 (+)
ppp2r1bb ppp2r1b,ppp2r1a,LOC107601716,LOC107717285,LOC107657255,LOC107709127,LOC108436518 coding downstream 232268 12613981 ~ 12624657 (+)
G105911 NA non-coding upstream 87 12363615 ~ 12366159 (+)
G105951 NA non-coding upstream 2694 12363118 ~ 12363552 (+)
G105945 NA non-coding upstream 21015 12344842 ~ 12345231 (+)
G105909 LOC107586245,LOC107662800,LOC107717280,LOC107729090 non-coding upstream 24354 12283908 ~ 12341892 (+)
G105987 NA non-coding downstream 156818 12538531 ~ 12539442 (+)
LOC122358874 NA non-coding downstream 198651 12580364 ~ 12581802 (+)
G106161 NA non-coding downstream 356338 12738051 ~ 12741077 (+)
G106171 NA non-coding downstream 390082 12771795 ~ 12772070 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding downstream 391744 12773457 ~ 12780375 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 268600 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 335697 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 993555 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 1637851 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 1975646 10353161 ~ 10390600 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 455869 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 1534860 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 1575484 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 2531198 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 3324800 15706513 ~ 15712439 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location