G105919 (LOC107586286,LOC107662800,LOC107586287)


Basic Information

Item Value
gene id G105919
gene name LOC107586286,LOC107662800,LOC107586287
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12289067 ~ 12311081 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU156469
CTGTGATCAAAGCACACTGTGGCTGAACATAAAGCAAAATACCTGTTTGTCCAGGATTGTAGATTGGTTTATCTGTTCGAATTATTGTAAGTGGATTATATGACATGAATTTGACTTTTCTCTTTTCAATCTGTCGAGTTTTTTTCCCTCGAGCTTCCACTTGGATCTCTTGCACTGAATCAGACTCAGGAGCCTGAAAGTCAAGGCAGCGGTGGAATTCCTTCTCTGTTCTCTCCTGTAGAAGTATTGTATATGGATTATATGACATGAATTTGACTTTTCTCTTTTCAATCATTTGAGTGCTTTTCCCTTTAGTTTCCACTTGGATCTCTTGCACTGAATCAAATTCAGGAGCCTGAAAGTCAAGGCAGCGGTGTAATTCCTTCTCTGTTCTCTCCTGTAGAAGTATTGTCTTCTGTTCATTGTAAACCAGAGAAATAGTAAGCTGCAGATTTTCTTCTGGTTTTAGAAGGCTTATACATAGTTTAGATTCAGAGCCTGATCTTATAACACCCGGAAATGTCACCAAGAACATCCTGCAAAAAGAAAGTGTATGTGCTTACGGCTTAGAAGTTCCTTGGTTAAGAGAAATCAGTAAAACACATGTTATTAATATTCCTCTTTTGAGTAACGcaggaaaaaaagacatcatGAAGGGATGCAAAGAACAAGATGTGTGTACAAATGTCTAAACCTTTtataaacacagtttttttttgactgGTCACTTGACCTCAGTGATGATTAACTGCAGATGCAACTCTGGTTTCCTGATGACATGAGTTAGGTATCTCACTATGGCTATGACCTGCCTACAGAAGTTATGAACCAAAAAGGTTTTGTAGTTAAAAGAACTAGATATA
>TU156470
CATTTTGTCCAGGATTGTAGATTTGTTTATCTGTCTGAATTATTGTATATGGATTATATGACATGAATTTGACTTTTCTCTTTTCAATCATTTGAGTGCTTTTCCCTTTAGTTTCCACTTGGATCTCTTGCACTGAATCAAATTCAGGAGCCTGAAAGTCAAGGCAGCGGTGTAATTCCTTCTCTGTTCTCTCCTGTAGAAGTATTGTCTTCTGTTCATTGTAAACCAGAGAAATAGTAAGCTGCAGATTTTCTTCTGGTTTTAGAAGGCTTATACATAGTTTAGATTCAGAGCCTGATCTTATAACACCCGGAAATGTCACCAAGAACATCCTGCAAAAAGAAAGTGTATGTGCATCCCCGTTGTGTGAAATTACAGTTAGTCTGAGATAAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156469 True 863 lncRNA 0.38 5 12289067 12311081
TU156470 False 395 lncRNA 0.37 2 12310152 12310712

Neighbor

gene id symbol gene type direction distance location
ulk2 ulk2,LOC107662799,LOC107729108,LOC107717276,LOC107657566 coding upstream 45834 12215249 ~ 12243233 (+)
sgsm2 sgsm2,LOC107729122,LOC107728220 coding upstream 144876 12098635 ~ 12144191 (+)
supt5h LOC107586261,LOC107657557,LOC107662786,LOC107597543 coding upstream 265889 12011232 ~ 12023178 (+)
il15l NA coding upstream 279436 12001697 ~ 12009631 (+)
plekhg2 LOC107586265,LOC107662784,LOC107726101,LOC107729120,LOC107657556,LOC107597579 coding upstream 287507 11965423 ~ 12001560 (+)
usf1 usf1,LOC107601709,LOC107657261,LOC107717282,LOC107586305,LOC107677518 coding downstream 80053 12391134 ~ 12397148 (+)
LOC122359162 gkup,LOC107709108,LOC107717281,LOC107657260,LOC107586304,LOC108436512 coding downstream 86680 12397761 ~ 12404693 (+)
ubash3bb ubash3bb,LOC107677523,LOC107709118,LOC107586242,LOC107601707,LOC107657259,LOC108436514,LOC108278382 coding downstream 93756 12404837 ~ 12418311 (+)
nkapd1 zgc:162339,LOC107717266,LOC107657245,LOC107601701,LOC107670955,LOC107709109,LOC107586236 coding downstream 290084 12601165 ~ 12603760 (+)
ppp2r1bb ppp2r1b,ppp2r1a,LOC107601716,LOC107717285,LOC107657255,LOC107709127,LOC108436518 coding downstream 302900 12613981 ~ 12624657 (+)
G105918 NA non-coding upstream 45 12286579 ~ 12289022 (+)
G105905 NA non-coding upstream 11611 12277073 ~ 12277456 (+)
G105904 NA non-coding upstream 12263 12276209 ~ 12276804 (+)
G105903 LOC107597581,LOC107717279,LOC107657569,LOC107586288 non-coding upstream 13011 12275813 ~ 12276056 (+)
G105902 NA non-coding upstream 13657 12274652 ~ 12275410 (+)
G105908 LOC107586245,LOC107729088,LOC107662756,LOC107677520,LOC107586286,LOC107662753,LOC107729089,LOC107586244,LOC107657263 non-coding downstream 7202 12318283 ~ 12382285 (+)
G105913 NA non-coding downstream 15081 12326162 ~ 12341564 (+)
G105940 NA non-coding downstream 22160 12333241 ~ 12334063 (+)
G105941 LOC107717280,LOC107657263,LOC107729090,LOC107662800 non-coding downstream 28546 12339627 ~ 12368017 (+)
G105945 NA non-coding downstream 33761 12344842 ~ 12345231 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 191421 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 258518 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 916376 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 1560672 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 1898467 10353161 ~ 10390600 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 526501 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 1605492 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 1646116 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 2601830 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 3395432 15706513 ~ 15712439 (+)

Expression


Co-expression Network