G105941 (LOC107717280,LOC107657263,LOC107729090,LOC107662800)


Basic Information

Item Value
gene id G105941
gene name LOC107717280,LOC107657263,LOC107729090,LOC107662800
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 12339627 ~ 12368017 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU156502
ttttcaatatttcagtGAAAGTTatgcactgtgtgtgtataaattgaTATTAACATTGAACGGTAATGTACACCAGTAGCAGGTACGTGTATTGtaggattttaatttttatttatttttttgtttgtttttttgttttctattccgATGCTGGATgattgtaaaaaacatttcactgcatgtcgtcccatgtatgtatgtgtatgtgacaaataaaattagaatttgatttgatttaattccCATCACCCATTGCactgacgacacacacacacacacctaattGCACTCATCACACGCTCACCTGCATTTAATAACTCTCACACCATAAATAGCACTTCCAAACTCTGTCCAGTGCCAAGTATTGTTTCAGCATTTATAACTGGCCTTGTGATAGCTACATTACGGAGACAGTTTAGTTTTCCTAGTGTAGTCTAGTCATAGTCTTGCCTTGTCTCACctgtttattttagattaacCCTTTTGTTTTGTCGTTTGGACTCTGTTTGCTCCTGTCTGAAATATCGCGTGTGTTTTCGGATTACCCCTCTTGCCTTGCCTATTTTGATATAGTTTGCCAATTATTGGATTTTTGTCTGATGTTATACAGCAGTGTCagtaagttaggctttacatataaattgtaGTTGGTGTCCAGAATtgtacactttatattaagtgggcAGTTTCTGAGGAATTACCATGTAAGTACACTGGTATTACAGTGCAGCACCAACACCTGggattattcatttaaattaacttattggctctgataaaaaaataagagtGAACCATTTTTACCATGTATTCTCTTTTCCATGTCCAAATGTGCTGTATGCACCACTGTTATGTCTGTAGTTCAGTTGTCTCTGGTATCCTGTTGAGTTTGATAGTGATTAAAGTTTTGACTTGATTAAGTGTTTCTAAAGTCAAATGTATTGTGAATTAAtttcttagtattttttttgcataattgatTTCTCTCACCACTCTTAAGGAAGCCGGTGGCTCTCTCTCGGATGGCTGAGGTTAGCTGTTCTGTATTTTCCAGATACTGCAGAATGTAAATATTAGGAGAAAGAACAGCCATGTTTTGTTCTCCACAGCCGTATGGCATCCGTAATAATCCATGAAGATTTGTCAGTGCACGACCCAATATGTCTCCTACAAACCAAACACAAAAGcaacattacattttagaaatcgAATCTGCTCATA
>TU156504
ttttcaatatttcagtGAAAGTTatgcactgtgtgtgtataaattgaTATTAACATTGAACGGTAATGTACACCAGTAGCAGGTACGTGTATTGtaggattttaatttttatttatttttttgtttgtttttttgttttctattccgATGCTGGATgattgtaaaaaacatttcactgcatgtcgtcccatgtatgtatgtgtatgtgacaaataaaattagaatttgatttgatttaattccCATCACCCATTGCactgacgacacacacacacacacctaattGCACTCATCACACGCTCACCTGCATTTAATAACTCTCACACCATAAATAGCACTTCCAAACTCTGTCCAGTGCCAAGTATTGTTTCAGCATTTATAACTGGCCTTGTGATAGCTACATTACGGAGACAGTTTAGTTTTCCTAGTGTAGTCTAGTCATAGTCTTGCCTTGTCTCACctgtttattttagattaacCCTTTTGTTTTGTCGTTTGGACTCTGTTTGCTCCTGTCTGAAATATCGCGTGTGTTTTCGGATTACCCCTCTTGCCTTGCCTATTTTGATATAGTTTGCCAATTATTGGATTTTTGTCTGATGTTATACAGCAGTGTCagtaagttaggctttacatataaattgtaGTTGGTGTCCAGAATtgtacactttatattaagtgggcAGTTTCTGAGGAATTACCATGTAAGTACACTGGTATTACAGTGCAGCACCAACACCTGggattattcatttaaattaacttattggctctgataaaaaaataagagtGAACCATTTTTACCATGTATTCTCTTTTCCATGTCCAAATGTGCTGTATGCACCACTGTTATGTCTGTAGTTCAGTTGTCTCTGGTATCCTGTTGAGTTTGATAGTGATTAAAGTTTTGACTTGATTAAGTGTTTCTAAAGTCAAATGTATTGTGAATTAAtttcttagtattttttttgcataattgatTTCTCTCACCACTCTTAAGGAAGCCGGTGGCTCTCTCTCGGATGGCTGAGGTTAGCTGTTCTGTATTTTCCAGATACTGCAGAATGTAAATATTGGGAGAAAGAACAGCCATGTTTTGTTCTCCACAGCCGTACGGCATCCGTAATAATCCATGAAGATTTGTCAGTGCACGACCCAATATGTCTCCTACAAACAATGACTGAAACTGAGAATCTGGCTGATCCCTCTATCACATCTTTAGGAAGAGTGAGATCCACTTCCTCTGAGAGACTGTCACCTATGAGccagagagacaaacacacatatcAGTGATCAGCAGAGAAACACTGTGATGCTAAATATTGTTTGCAGACAAACCTTTTGGACACAGTAACCAGCTGTAGGTCTCTGTCTTTTCAGTTCCTTCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156502 False 1221 lncRNA 0.36 2 12339627 12368017
TU156504 True 1390 lncRNA 0.37 2 12339627 12341128

Neighbor

gene id symbol gene type direction distance location
ulk2 ulk2,LOC107662799,LOC107729108,LOC107717276,LOC107657566 coding upstream 96394 12215249 ~ 12243233 (+)
sgsm2 sgsm2,LOC107729122,LOC107728220 coding upstream 195436 12098635 ~ 12144191 (+)
supt5h LOC107586261,LOC107657557,LOC107662786,LOC107597543 coding upstream 316449 12011232 ~ 12023178 (+)
il15l NA coding upstream 329996 12001697 ~ 12009631 (+)
plekhg2 LOC107586265,LOC107662784,LOC107726101,LOC107729120,LOC107657556,LOC107597579 coding upstream 338067 11965423 ~ 12001560 (+)
usf1 usf1,LOC107601709,LOC107657261,LOC107717282,LOC107586305,LOC107677518 coding downstream 23117 12391134 ~ 12397148 (+)
LOC122359162 gkup,LOC107709108,LOC107717281,LOC107657260,LOC107586304,LOC108436512 coding downstream 29744 12397761 ~ 12404693 (+)
ubash3bb ubash3bb,LOC107677523,LOC107709118,LOC107586242,LOC107601707,LOC107657259,LOC108436514,LOC108278382 coding downstream 36820 12404837 ~ 12418311 (+)
nkapd1 zgc:162339,LOC107717266,LOC107657245,LOC107601701,LOC107670955,LOC107709109,LOC107586236 coding downstream 233148 12601165 ~ 12603760 (+)
ppp2r1bb ppp2r1b,ppp2r1a,LOC107601716,LOC107717285,LOC107657255,LOC107709127,LOC108436518 coding downstream 245964 12613981 ~ 12624657 (+)
G105940 NA non-coding upstream 5564 12333241 ~ 12334063 (+)
G105919 LOC107586286,LOC107662800,LOC107586287 non-coding upstream 28546 12289067 ~ 12311081 (+)
G105928 NA non-coding upstream 31779 12305485 ~ 12307848 (+)
G105918 NA non-coding upstream 50605 12286579 ~ 12289022 (+)
G105905 NA non-coding upstream 62171 12277073 ~ 12277456 (+)
G105987 NA non-coding downstream 170514 12538531 ~ 12539442 (+)
LOC122358874 NA non-coding downstream 212347 12580364 ~ 12581802 (+)
G106161 NA non-coding downstream 370034 12738051 ~ 12741077 (+)
G106171 NA non-coding downstream 403778 12771795 ~ 12772070 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding downstream 405440 12773457 ~ 12780375 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 241981 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 309078 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 966936 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 1611232 10721972 ~ 10728395 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other upstream 1949027 10353161 ~ 10390600 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other downstream 469565 12837582 ~ 12848667 (+)
G106376 cluh,LOC107685050 other downstream 1548556 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 1589180 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 2544894 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 3338496 15706513 ~ 15712439 (+)

Expression


Co-expression Network