G106234


Basic Information

Item Value
gene id G106234
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13258236 ~ 13798248 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU156962
TTTAAACTTACCAGTAAATGTAccatactgatataaaaactttttaaagaaaatatattccattATTTGATATCAATCTCGCAGTCCCTGACCGTGTGGGAAGTTATTGCTACAACTTGGACATTTTAGCATCTTGAGTTGTATTACTGTTTAGGGTTACTAGGGGgtgtattaaaaatttaaaggTCCAGAAATTAGTAGAAAATGGAAGACAAATCTAAATACAGTTTTGTAGACTGTATAGacttattaatactattatttaattaataaaaaataacttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttTTTGATTGTTACATGGGGCCGTTTATTAACTTTGTACAACCAAAAAAAACGTTTAGGTGAATACAACATAGCTAGTTTTCTAGCTATGTGGAGGTTTGATCCCAGGATGTTACAGGAGGAACAGGAAGATAAGAAGGAAAAGTGCAGGAAAAAGAAGACAAcaggaaagaaaggaaagagaaaaaagtagGAAAATAAGGGAGCAAGGTGGAGTGTCTCTTGGAAAAGTCAAGATGGCATGACTGcttagaacaaataaaaaaagaaaagcactttTGCCATTTTACTTCTGGGCAGGGATCATGTCATCGATGGACTCGCCCTTCTCcagtttcttttccatttcaaccaTGAGCTTCACACCATCGACCACCAGCTGTACCTGTTGCACCTCAGAGGAGCCGAGACGGTCAGCGTTGGAGATGTCGAACACACCACCGACAGAGGCAGTGTCCACACCACCGTGCCACGCTTCTGAAGACGCAGTCTGGTCAGGATCTCCTCAAATTTGGCATGTGTGCTGAGTTTGGGCAGCTTGACGTGGACACCACCACGCAGGCCGGTACCCAAGTTAGAGGGGCAGGTCAGGATGAAACCAAGATGCTCGTTCCACATGAAACCGTGGTTGTGCTTCTTGAAGACCTCCTCAATCTGCGCAGGCCAACGCAGAACCTCTTGAAGACCTCCTTCATGTTGCCGCCCTTCTGCATGGAAATGACACGCAGGTGATCCTCCTCGTTCACCCACACAAGGAAGGTCTTGTTGTCATTGTGCCAGATGCCTCTTGCGTCAGGCCAGTCGCGAGCCATGCCAGCAGCCAACAGCAGGGGGGACACGGGCTtgtcaaacaggaagtggtcAGCAATGAGCTGCTCCTGTTCCTTGTCAGTCATGTCCTTCAGAGGGTAGTACTTGCCCTTGAACTCACCATCCAGGCTGTTCAGAGCTGTGAGAAAAACGTCAGTAAGACCATGCACTTTGCTTTGTGGATGTCAGGACATAAAGTCAGTGAGACTCACCCTCAATGGACAGCTTCTCCACAGCTCTACGCTCACCACGGCTGTTGGTGGGAGGCAGGGTGAATCCCTTGATGCTGCGGCCAGTACGCACACGGCTGCTCTGGACGTAGTTGGGGTCAAGGTCATCACCACCCTCAGGTTCTCCCAGTTCAGATCAGTGCTGTGCTTGTCGGTGGGCTTGTAGCCTCCGTGACGGTCAGAAATGATGGGGTCGAACAAATCCTTGAAGACTTCGTAGGACTCCTCATCACCAGCCACACAGCCAACGGTCATGATAAAGGGGCCTTGCTCCTGAGCTTGTTGTAGATGTCCTTATTCAGGACCTTGGCCATATGGTTGTTGTGCTGGGAGAGGTCAGGGTACTCCTCCTCCAGAGCAAACTTCATCTTGTAATCGTTGTTGCAGTTCTTAGTCATGATTGCACTTTTCCGGCATGGGAGAAAAGGTAACAGTCCTCAGATCACTACTTTTTGGGGGGGATTTCTGCTGTTTTCCTGTATTCTGTtttcaacatgaaatatttgtCATGccctttgtgtgtttgttttggtttctttaaTGAGTGGTACCTTAATGTCAATTCTTCTAAATAACAATCTAATTATTTTTGGTCCGAGTATccttttgtattaaaatgaataaagaaactagAAAACAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0031497 chromatin assembly biological_process
GO:0048468 cell development biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0006333 chromatin assembly or disassembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0065004 protein-DNA complex assembly biological_process
GO:0034728 nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156962 True 2048 lncRNA 0.43 11 13258236 13798248

Neighbor

gene id symbol gene type direction distance location
cbl cbl,LOC107718267,LOC107601723,LOC107690460 coding upstream 7019 13226503 ~ 13251217 (+)
grik4 grik4,LOC108439963 coding upstream 39017 12957097 ~ 13219219 (+)
arhgef12a LOC107709137,LOC107696008,LOC107586229 coding upstream 315587 12903006 ~ 12942649 (+)
tlcd5a tmem136a,LOC107709136,LOC107601721,LOC107586230,LOC107717274,LOC107657235,LOC107696007,LOC108436527 coding upstream 355776 12898047 ~ 12902460 (+)
oafa oafa,LOC107709135,LOC107696006,LOC107586231,LOC107717291,LOC107657251,LOC107601720,LOC105912781 coding upstream 361255 12883017 ~ 12896981 (+)
pak4 pak4,LOC107743662,LOC107664940,LOC107585589,LOC107685053,LOC107592622,LOC107744790 coding downstream 164205 13962453 ~ 13975188 (+)
zgc:152863 LOC107743663,LOC107664952,LOC107585590,LOC107592625,LOC107744814,LOC107685175 coding downstream 178596 13976844 ~ 13981992 (+)
npat LOC107743659,LOC107664943,LOC107585592,LOC107744791,LOC107685055,LOC107592638 coding downstream 197478 13995726 ~ 14003601 (+)
tsr1 tsr1,LOC107743656,LOC107585596,LOC107685058,LOC107592627,LOC107744794,LOC107664951 coding downstream 245490 14043738 ~ 14053249 (+)
hic1 LOC107743655,LOC107664949,LOC107585597,LOC107685059,LOC107744795 coding downstream 268118 14066366 ~ 14078109 (+)
LOC122358384 NA non-coding upstream 302429 12945077 ~ 12955807 (+)
G106157 LOC107670963,LOC107731150,LOC107586232 non-coding upstream 477861 12773457 ~ 12780375 (+)
G106171 NA non-coding upstream 486166 12771795 ~ 12772070 (+)
G106161 NA non-coding upstream 517159 12738051 ~ 12741077 (+)
LOC122358874 NA non-coding upstream 676434 12580364 ~ 12581802 (+)
G106370 NA non-coding downstream 1053 13799301 ~ 13811099 (+)
G106381 pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786 non-coding downstream 83873 13882121 ~ 13884081 (+)
G106385 NA non-coding downstream 115331 13913579 ~ 13913790 (+)
G106249 LOC107585585,LOC107743723,LOC107685050,LOC107664929 non-coding downstream 116993 13915241 ~ 13915685 (+)
G106603 NA non-coding downstream 283803 14082051 ~ 14083858 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 409569 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 1160590 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 1227687 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 1885545 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 2529841 10721972 ~ 10728395 (+)
G106376 cluh,LOC107685050 other downstream 118325 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 158949 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 1114663 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 1908265 15706513 ~ 15712439 (+)
G107107 NA other downstream 2082866 15881114 ~ 15883510 (+)

Expression


Co-expression Network