G106381 (pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786)


Basic Information

Item Value
gene id G106381
gene name pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 13882121 ~ 13884081 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU157176
GGCCACCTCccacattttaatggttttatctCTTGAGGCAGAAACTATATGATCTCCATTGGGCATAATAGCTACAGATGAAACATTATGGTCATGcCCGTGCATTGTCCTGATACACTCGAAGCCCTGGAAGTCCCACAGCTTAATGGTCATGTCCGCTGAACAGGAGGCTAGCAGCTTTCCAGTATGATCAAAGGAGATGTCCTGCACAGAGTCTGTGTGGCCCTTTAGGGTCCGCTCAAAGTCGCCCGTTTCATAGTCCCATAC

Function

symbol description
pafah1b1 Enables dynein complex binding activity. Involved in several processes, including adult locomotory behavior; microtubule cytoskeleton organization; and nervous system development. Located in several cellular components, including kinetochore; microtubule cytoskeleton; and nuclear envelope. Part of microtubule associated complex. Implicated in lissencephaly and lissencephaly 1. Biomarker of hepatocellular carcinoma and schizophrenia.

NR:

description
PREDICTED: lissencephaly-1 homolog A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157176 True 267 lncRNA 0.48 2 13882121 13884081

Neighbor

gene id symbol gene type direction distance location
LOC122358866 cluh,LOC107664929,LOC107685050,LOC107743723,LOC107744785 coding upstream 85276 13775064 ~ 13796845 (+)
LOC122359191 LOC107709114,LOC107677520,LOC107586244 coding upstream 126029 13752142 ~ 13756092 (+)
LOC122358500 LOC107718289 coding upstream 214710 13604091 ~ 13667411 (+)
LOC122358501 LOC107690467,LOC107743726,LOC107585604,LOC107664918,LOC107718289 coding upstream 288442 13577002 ~ 13593679 (+)
si:ch1073-145m9.1 si:ch1073-145m9.1,LOC107592629,LOC107690475,LOC107718303,LOC107743751 coding upstream 317399 13560833 ~ 13564722 (+)
pak4 pak4,LOC107743662,LOC107664940,LOC107585589,LOC107685053,LOC107592622,LOC107744790 coding downstream 78372 13962453 ~ 13975188 (+)
zgc:152863 LOC107743663,LOC107664952,LOC107585590,LOC107592625,LOC107744814,LOC107685175 coding downstream 92763 13976844 ~ 13981992 (+)
npat LOC107743659,LOC107664943,LOC107585592,LOC107744791,LOC107685055,LOC107592638 coding downstream 111645 13995726 ~ 14003601 (+)
tsr1 tsr1,LOC107743656,LOC107585596,LOC107685058,LOC107592627,LOC107744794,LOC107664951 coding downstream 159657 14043738 ~ 14053249 (+)
hic1 LOC107743655,LOC107664949,LOC107585597,LOC107685059,LOC107744795 coding downstream 182285 14066366 ~ 14078109 (+)
G106370 NA non-coding upstream 71022 13799301 ~ 13811099 (+)
G106234 NA non-coding upstream 83873 13258236 ~ 13798248 (+)
G106354 NA non-coding upstream 189228 13692379 ~ 13692893 (+)
G106350 NA non-coding upstream 196672 13680180 ~ 13685449 (+)
G106276 ube4a,LOC107743704,LOC107718272 non-coding upstream 545444 13335308 ~ 13336677 (+)
G106385 NA non-coding downstream 29498 13913579 ~ 13913790 (+)
G106249 LOC107585585,LOC107743723,LOC107685050,LOC107664929 non-coding downstream 31160 13915241 ~ 13915685 (+)
G106603 NA non-coding downstream 197970 14082051 ~ 14083858 (+)
G106614 NA non-coding downstream 282312 14166393 ~ 14166613 (+)
LOC122359060 NA non-coding downstream 282903 14166984 ~ 14178264 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 1033454 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 1784475 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 1851572 12027555 ~ 12030549 (+)
LOC122358628 NA other upstream 2509430 11370248 ~ 11372691 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other upstream 3153726 10721972 ~ 10728395 (+)
G106376 cluh,LOC107685050 other downstream 32492 13916573 ~ 13917262 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other downstream 73116 13957197 ~ 13961807 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 1028830 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 1822432 15706513 ~ 15712439 (+)
G107107 NA other downstream 1997033 15881114 ~ 15883510 (+)

Expression


Co-expression Network