LOC122359060


Basic Information

Item Value
gene id LOC122359060
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14166984 ~ 14178264 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU157521
ttttcagtttttctttcttttttgttaaaaatacttaaaatatcaTAATCCAGGACTGCTTCATTGCTTTAATTTTCCTTTATTGGCAtactcattatttttattttaaaaacttcagACTTTTTTATCTTCCTTTTTTAGTCTTTAGACAGTTACACTACTTAGACATGCTAGTAAATATTCCAATTGATTTAGGTTCAAGAACATGAACAAATACACGTTTATGATAGAATGCACTCATACACTATACAAAACGCCGCATAATAGctgaattaaacaaatattcatAAGATTGCTACGCGTAGTTCACCAAAAGACTGTAAATTCATTTTCCATTGCAGACCTGTATGCTTTTATACACCGAGAcgcaaaaaatgatttttttgaaaaatatctgttttttgttCACACATCAGAAGACAATGAACAACTGAACCGTTGTCATTCCATAGTTCTTAAAAACATATTCttgtgtttcacaaaataaaaaaaataatcataaaaggTTAGAACGACCCGAGTGTGTGTAATTGGTCAGAGAATGTCCATTTTCTGGGTAAAccatccctttaaaaaaaaataaaaattccccCCCAGATGCCATAATCCCACTCTGTTAGCGCTGTGACTCgtgaataattcaaataaaaagaatattcttCGTATCATCTGTGGACCCGAGTCGTGAAGGTCTTTTACGCATTTTCTGTGTGACCCTCTCCATCCAGCACGCGCAGCCCGCCGAGTGACGTCATGCAGCACGTCCGAAGCGCGAGGCTGCTGATGTTTTTCAATGAATGAGATCCCCCTCCCATCTGCATTACTATCACTACAGGCTGTCTATAAATTGCGAACGATGGGAGAACCCGTTAAATTTCACGAGTGTCATCGACGGCAAAAGAGTGAGTGGATACGTCCAGCGGAAGACGTCGCACCTGCCATTCGGCGTCGTTTCTCGTCGGCAGAGGTAACGAACGAGCCGCCGAAGTTGACAGGTAACGCGGGTACTTCGGCGATGCTAGCCGAGAAGTTTCTTGAGGTGCGTTCGGACCGCTTTAACAAGAGGTGTTTTTCTACTAAAATGAGTATCTGAGATAAAGGTCATGCATTCTGCGTGCATGGAGCAGAAAAATCGCCAAATCATGACCAACCAGGGATGCAGTATTCGGATCGTCCTTcaaaaaagcatcaagaagGATTGTTAACAGAAATATGCACAGTTCACCAAGATGTCCGCATTGATCAGTGGTTGGTCGTGCTGAAAGGGCTGCGTTTATTCCGGCTGGCAGCCGCAGGGGGCGCTCTTCTCAGGGCCACAGCTCCTCACCTGCTGACCGGCATCTGAAC
>TU157523
GCGTGATACTGAATTAGGCTTGCATAACCCCTTACCATCACAACCACCAACAGCTAATATCCTGGGAGTGAGTCAGTCCGATAATCTCCACTGCAATCAATACAGAGTTGTGGAAGCAGGCCATGCCATTATGGACTCTCTGGGCCAGAAAAACTGCTTTCCTATTTATAGCTGCCATCCGAGATGCCTCGCTTATTGTTTAGAGAGATATACAGATAGTTATAGAGCTCTTTTGTGGATCGAAATGCCTCTTCTctgattttaaaagattttttatttgtttttaaggcTCGGAAAATCAGATGgataacagtaaaaacatgcaaaaagtaCAATCGGAAAGCGTGCATTCGTTCAAGGCTATTCAGCTGTTGAAAGAATATGGAGAACCTTGTAAAGTCCGcccgggcctggttagtacagCTTTAAGAACGCTGAGCAGGAATCTGTGTCATCTACCCTGGAAACCCCTGTGCTGAATATGTGAGCCGTGTCGTAGCCAGCCAGCCAATCAGGTGTTTTTCTACTAAAATGAGTATCTGAGATAAAGGTCATGCATTCTGCGTGCATGGAGCAGAAAAATCGCCAAATCATGACCAACCAGGGATGCAGTATTCGGATCGTCCTTcaaaaaagcatcaagaagGATTGTTAACAGAAATATGCACAGTTCACCAAGGTAGTATTTCCAACAGCTGGCGATAATGCAAAGGGAGATGGTAAAGGAGAGAAGCAGCCAGCGGTGCTCGCCACTCAACTCTAGTACTGTTTGTTGGATTGTGGAGAGGTGTTTTTGGCCGTATCATACAGGACAGACTGACCTCCCACACATAATTACTCATCTCCTTTCAACACTTGATATTTCTCCCTCACTTTCACAGTACATTTTCATCATCTCCGACTACCCTCGTTTCAGCTCTATGCGTTTCACTTTAGCAGATTACAGTTGCTCTGAAATTATAACCCGAGGCTTCAGATCCCAAATCTAATGTTTCCTTTCATTCCTAACTGGACTGTCCTTTTGGTCTCTTTTGGTCCTCTAACTATATGGGGTAGAATTTATTTCATCCTTCTATGCTGTAAAACTAGAAAACAATGTTTCAGGTTTTACAGCACCATGTAGTTTGCAGTTCACGGGCCTATAACTAACTAAGGCCCAGATTTAATATGGATTCAAGATGGACTGAATAATggctaataaacatttatagacCGCACACAGTTGCATAAGAGCAATACTATTGACATAttaccaaaataaaatgacacaataaTGCATATAACTTATTGTAATGAAACACCACACTATTAAACACTACTTTAAAATTACATGTAGTATCATATTAAacctaatgaaaaaaaaagtattattttgcaCCTTAGAAATGTAATAACTATAGTTTTTCAGCCTGAATTACGGACTAGCTTTACTTTAGTAATGATTAAAGGGAACCAATGCGTTAGTTCACTTTAACAGTTCATTtatatatagcaaataaaacaataaaaacacgataacataaaaaaacattacatttcgaaaatgcatcatttacaATATACTTCAATGCATATTCAATAACACGTTTCACTGAGATTTTATGTATGTACTGGGATACATAGCCCACTATTATGCTAATCAAGTCTCGCTTCTGATTAAATAACACGGCAAATAACGATTCCCACTGGAAACCTTTATTGCCAAGGACATGGATTCATCTGATTCCAGGAAAGTGGTCTTAATTGTTTAACGGATAATTTAATGAGTCTGGAGTGCAAATGAATTGAGATGAAGAGTGGATCTAAAGCGATGCTGATGTTCAGCGTGTCTGCGGTCAGGTGTATCCCTGCTGAGAACGCTTCTGTTCCGCACAGTCACTGCGCTATGTCTGACAGAGATCCGGTTAATACATCcattttgttcttgtttgtgGGTGGGTGAAGTGTGTGAAGATGAGTATACAATTAGGACATGGACGGTATACAAAAGAGGGAAATTGAGAAAATGGAAGCGAGCAAGACTAAGCTCAGAAACATGATAGCGACAGAGGTGACTCAGCGTTTCCTGTAGCAGGAAGATAAACACTTTGCCAGGCACTTGACGAAAGCGGCCCGCTCTCGCTCGAATCCGATCGCAACGGAGACAAAAGCCCAGATACagatgtacacaaacacacacgctgcacaataaaacacactctGCCAAGATATAGGGCTTTTCATAGGCTAAGCATAGgctggatttaaaaaaagaaagactggTTTTATATGAGTCACAGCTTTTACAAAAGCCATCATTTCTCTATTGTTACACTTACTGTCACATTGCTGGCACAATCGGCATAGTGTGGCGTCTTCCTGGCCACAACAGTTTCAGATATAGGGCTCTATTTCTAGAGACTGTCCTTATATAGGAACGCATGAAAAATCGACGGTCATATTagaattttacaataaaatttactttttaatgttatcGGTATCAGTCTGACAAGTAAATAGTGCCAAAGTATTTGAAATAGTttgcattcaaaacatttttatcaaatgtttaGTTAATCAGTAGGGGcctatacaaaatattttcttacatttagcatttaaagaaagaaatgactatataatacttttaataaaaagtaacatttacatgatgttttcttaaaaaaaattgttatcaGTACT
>XR_006252681.1
CTTTATTGGCAtactcattatttttattttaaaaacttcagACTTTTTTATCTTCCTTTTTTAGTCTTTAGACAGTTACACTACTTAGACATGCTAGTAAATATTCCAATTGATTTAGGTTCAAGAACATGAACAAATACACGTTTATGATAGAATGCACTCATACACTATACAAAACGCCGCATAATAGctgaattaaacaaatattcatAAGATTGCTACGCGTAGTTCACCAAAAGACTGTAAATTCATTTTCCATTGCAGACCTGTATGCTTTTATACACCGAGAcgcaaaaaatgatttttttgaaaaatatctgttttttgttCACACATCAGAAGACAATGAACAACTGAACCGTTGTCATTCCATAGTTCTTAAAAACATATTCttgtgtttcacaaaataaaaaaaataatcataaaaggTTAGAACGACCCGAGTGTGTGTAATTGGTCAGAGAATGTCCATTTTCTGGGTAAAccatccctttaaaaaaaaataaaaattccccCCCAGATGCCATAATCCCACTCTGTTAGCGCTGTGACTCgtgaataattcaaataaaaagaatattcttCGTATCATCTGTGGACCCGAGTCGTGAAGGTCTTTTACGCATTTTCTGTGTGACCCTCTCCATCCAGCACGCGCAGCCCGCCGAGTGACGTCATGCAGCACGTCCGAAGCGCGAGGCTGCTGATGTTTTTCAATGAATGAGATCCCCCTCCCATCTGCATTACTATCACTACAGGCTGTCTATAAATTGCGAACGATGGGAGAACCCGTTAAATTTCACGAGTGTCATCGACGGCAAAAGAGTGAGTGGATACGTCCAGCGGAAGACGTCGCACCTGCCATTCGGCGTCGTTTCTCGTCGGCAGAGGTAACGAACGAGCCGCCGAAGTTGACAGGTAACGCGGGTACTTCGGCGATGCTAGCCGAGAAGTTTCTTGAGGTGCGTTCGGACCGCTTTAACAAGAGgcTCGGAAAATCAGATGgataacagtaaaaacatgcaaaaagtaCAATCGGAAAGCGTGCATTCGTTCAAGGCTATTCAGCTGTTGAAAGAATATGGAGAACCTTGTAAAGTCCGcccgggcctggttagtacagCTTTAAGAACGCTGAGCAGGAATCTGTGTCATCTACCCTGGAAACCCCTGTGCTGAATATGTGAGCCGTGTCGTAGCCAGCCAGCCAATCAGGTGTTTTTCTACTAAAATGAGTATCTGAGATAAAGGTCATGCATTCTGCGTGCATGGAGCAGAAAAATCGCCAAATCATGACCAACCAGGGATGCAGTATTCGGATCGTCCTTcaaaaaagcatcaagaagGATTGTTAACAGAAATATGCACAGTTCACCAAGGTAGTATTTCCAACAGCTGGCGATAATGCAAAGGGAGATGGTAAAGGAGAGAAGCAGCCAGCGGTGCTCGCCACTCAACTCTAGTACTGTTTGTTGGATTGTGGAGAGGTGTTTTTGGCCGTATCATACAGGACAGACTGACCTCCCACACATAATTACTCATCTCCTTTCAACACTTGATATTTCTCCCTCACTTTCACAGTACATTTTCATCATCTCCGACTACCCTCGTTTCAGCTCTATGCGTTTCACTTTAGCAGATTACAGTTGCTCTGAAATTATAACCCGAGGCTTCAGATCCCAAATCTAATGTTTCCTTTCATTCCTAACTGGACTGTCCTTTTGGTCTCTTTTGGTCCTCTAACTATATGGGGTAGAATTTATTTCATCCTTCTATGCTGTAAAACTAGAAAACAATGTTTCAGGTTTTACAGCACCATGTAGTTTGCAGTTCACGGGCCTATAACTAACTAAGGCCCAGATTTAATATGGATTCAAGATGGACTGAATAATggctaataaacatttatagacCGCACACAGTTGCATAAGAGCAATACTATTGACATAttaccaaaataaaatgacacaataaTGCATATAACTTATTGTAATGAAACACCACACTATTAAACACTACTTTAAAATTACATGTAGTATCATATTAAacctaatgaaaaaaaaagtattattttgcaCCTTAGAAATGTAATAACTATAGTTTTTCAGCCTGAATTACGGACTAGCTTTACTTTAGTAATGATTAAAGGGAACCAATGCGTTAGTTCACTTTAACAGTTCATTtatatatagcaaataaaacaataaaaacacgataacataaaaaaacattacatttcgaaaatgcatcatttacaATATACTTCAATGCATATTCAATAACACGTTTCACTGAGATTTTATGTATGTACTGGGATACATAGCCCACTATTATGCTAATCAAGTCTCGCTTCTGATTAAATAACACGGCAAATAA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko04742 Taste transduction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU157521 False 1347 lncRNA 0.41 3 14166984 14178264
TU157523 True 2685 lncRNA 0.38 3 14170547 14175557
XR_006252681.1 False 2376 lncRNA 0.39 4 14167061 14174548

Neighbor

gene id symbol gene type direction distance location
hic1 LOC107743655,LOC107664949,LOC107585597,LOC107685059,LOC107744795 coding upstream 88875 14066366 ~ 14078109 (+)
tsr1 tsr1,LOC107743656,LOC107585596,LOC107685058,LOC107592627,LOC107744794,LOC107664951 coding upstream 113735 14043738 ~ 14053249 (+)
npat LOC107743659,LOC107664943,LOC107585592,LOC107744791,LOC107685055,LOC107592638 coding upstream 163383 13995726 ~ 14003601 (+)
zgc:152863 LOC107743663,LOC107664952,LOC107585590,LOC107592625,LOC107744814,LOC107685175 coding upstream 184992 13976844 ~ 13981992 (+)
pak4 pak4,LOC107743662,LOC107664940,LOC107585589,LOC107685053,LOC107592622,LOC107744790 coding upstream 191796 13962453 ~ 13975188 (+)
rtn4rl1b LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107685061,LOC107592642 coding downstream 146369 14324633 ~ 14456594 (+)
slc13a5b slc13a5b,slc13a5,LOC107743744,LOC107548552,LOC107664910,LOC107744815,LOC107685176,LOC107562952,LOC108425802 coding downstream 355465 14533729 ~ 14542684 (+)
slc47a3 LOC107664894,LOC107743743,LOC107548553 coding downstream 368445 14546709 ~ 14553510 (+)
ppm1da ppm1da,LOC107743648,LOC107548567,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding downstream 507189 14685453 ~ 14691067 (+)
bcas3 bcas3,LOC107743646,LOC107664928,LOC107685068 coding downstream 513315 14691579 ~ 14884914 (+)
G106614 NA non-coding upstream 371 14166393 ~ 14166613 (+)
G106603 NA non-coding upstream 83126 14082051 ~ 14083858 (+)
G106249 LOC107585585,LOC107743723,LOC107685050,LOC107664929 non-coding upstream 251299 13915241 ~ 13915685 (+)
G106385 NA non-coding upstream 253194 13913579 ~ 13913790 (+)
G106381 pafah1b1,lis1a,LOC107664934,LOC107743664,LOC107690414,LOC107744786 non-coding upstream 282903 13882121 ~ 13884081 (+)
G106648 NA non-coding downstream 77587 14255851 ~ 14256663 (+)
G106678 wdr81,LOC107664921,LOC107743652,LOC107685063,LOC107744800,LOC107562947 non-coding downstream 352953 14531217 ~ 14531538 (+)
G106679 NA non-coding downstream 354138 14532402 ~ 14532730 (+)
G106718 pitpnm3,LOC107664939,LOC107685064,LOC107548564,LOC107744810,LOC107562949 non-coding downstream 405063 14583327 ~ 14585666 (+)
G106734 NA non-coding downstream 475032 14653296 ~ 14671494 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 205177 13957197 ~ 13961807 (+)
G106376 cluh,LOC107685050 other upstream 249722 13916573 ~ 13917262 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 1318317 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 2069338 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 2136435 12027555 ~ 12030549 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 734647 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 1528249 15706513 ~ 15712439 (+)
G107107 NA other downstream 1702850 15881114 ~ 15883510 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other downstream 1826605 16004869 ~ 16043265 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other downstream 1911493 16089757 ~ 16236341 (+)

Expression


Co-expression Network