G106648


Basic Information

Item Value
gene id G106648
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 14255851 ~ 14256663 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU157565
GGAAAACAACAGTCCATAAGTGGATTGAGAGCCCCATCAGCTCAGAGGCATCACAGGCACGCGCATCTCTCAGCTGGAGCGCATCATCTGTCCATTCCGCCACTCACTCACCGCGCACGATATGTGAAGGTGTAACGCTCACACATGTGATTTGTCTGTGTCCCGAGACCCGCAAAATCTGGTCGAAATGCTTTCAAGAAGGTGGATTGTTGGAGATTTTGTATGGAGGCAGCGGGACACCTCCCCATAGTTCGGCGTAGAGTCTCTGTGAAGAGTGCGCGAGAGACCGACACCGGAGTTGCCGCGGCTCGGATTGAGGACCATCTGCTGATTTTCCCCAACAGTCTGTGCTTCAGAGGGATAACCGACTCTCAGACGCGTCAGTATCTGGCAATAAGAGCTTTTAGAGCTTTTCGGGATAACATACCACAATACCGCTTGCTCCTCGGCGGTCGCTGAGACCTGAACTACACCACCAGGTGCCCCCGCTTAATCTATTCACAGGATAACAATTAATACTGCAGAATGTGTTCGTCTCCTTTTGGACTGCTCTCAGTTGCATCTAGTGAAATTTGTGCTCGGGACCGCACAGGATGAAATGGACATcagcactgaaataaattagcCAAATTGAAATTCAGCGAGAAGTCTCATCCGTGCTAGGAGtacatacatttatgtattctgATTAAATCAGACAACGTTTGATAGATCGCCTGGCATCTTACTGACAGTGTGAAGTCTGGAATACAAGAATAAATGAACCTGAGTGGACAGACAGAGAATTAACCATATCCAACATGTTTAAACGGG

Function

GO:

id name namespace
GO:0098796 membrane protein complex cellular_component
GO:0005516 calmodulin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157565 True 813 lncRNA 0.48 1 14255851 14256663

Neighbor

gene id symbol gene type direction distance location
hic1 LOC107743655,LOC107664949,LOC107585597,LOC107685059,LOC107744795 coding upstream 177742 14066366 ~ 14078109 (+)
tsr1 tsr1,LOC107743656,LOC107585596,LOC107685058,LOC107592627,LOC107744794,LOC107664951 coding upstream 202602 14043738 ~ 14053249 (+)
npat LOC107743659,LOC107664943,LOC107585592,LOC107744791,LOC107685055,LOC107592638 coding upstream 252250 13995726 ~ 14003601 (+)
zgc:152863 LOC107743663,LOC107664952,LOC107585590,LOC107592625,LOC107744814,LOC107685175 coding upstream 273859 13976844 ~ 13981992 (+)
pak4 pak4,LOC107743662,LOC107664940,LOC107585589,LOC107685053,LOC107592622,LOC107744790 coding upstream 280663 13962453 ~ 13975188 (+)
rtn4rl1b LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107685061,LOC107592642 coding downstream 67970 14324633 ~ 14456594 (+)
slc13a5b slc13a5b,slc13a5,LOC107743744,LOC107548552,LOC107664910,LOC107744815,LOC107685176,LOC107562952,LOC108425802 coding downstream 277066 14533729 ~ 14542684 (+)
slc47a3 LOC107664894,LOC107743743,LOC107548553 coding downstream 290046 14546709 ~ 14553510 (+)
ppm1da ppm1da,LOC107743648,LOC107548567,LOC107664959,LOC107685067,LOC107723873,LOC107562958 coding downstream 428790 14685453 ~ 14691067 (+)
bcas3 bcas3,LOC107743646,LOC107664928,LOC107685068 coding downstream 434916 14691579 ~ 14884914 (+)
LOC122359060 NA non-coding upstream 77587 14166984 ~ 14178264 (+)
G106614 NA non-coding upstream 89238 14166393 ~ 14166613 (+)
G106603 NA non-coding upstream 171993 14082051 ~ 14083858 (+)
G106249 LOC107585585,LOC107743723,LOC107685050,LOC107664929 non-coding upstream 340166 13915241 ~ 13915685 (+)
G106385 NA non-coding upstream 342061 13913579 ~ 13913790 (+)
G106678 wdr81,LOC107664921,LOC107743652,LOC107685063,LOC107744800,LOC107562947 non-coding downstream 274554 14531217 ~ 14531538 (+)
G106679 NA non-coding downstream 275739 14532402 ~ 14532730 (+)
G106718 pitpnm3,LOC107664939,LOC107685064,LOC107548564,LOC107744810,LOC107562949 non-coding downstream 326664 14583327 ~ 14585666 (+)
G106734 NA non-coding downstream 396633 14653296 ~ 14671494 (+)
LOC122359248 NA non-coding downstream 812434 15069097 ~ 15076291 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 294044 13957197 ~ 13961807 (+)
G106376 cluh,LOC107685050 other upstream 338589 13916573 ~ 13917262 (+)
spa17 spa17,nrgnb,LOC107709112,LOC107696004,LOC107586300,LOC108278372,LOC107601687,LOC107657238,LOC107717271 other upstream 1407184 12837582 ~ 12848667 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other upstream 2158205 12093957 ~ 12097646 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other upstream 2225302 12027555 ~ 12030549 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other downstream 656248 14912911 ~ 14928225 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other downstream 1449850 15706513 ~ 15712439 (+)
G107107 NA other downstream 1624451 15881114 ~ 15883510 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other downstream 1748206 16004869 ~ 16043265 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other downstream 1833094 16089757 ~ 16236341 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G285694 NA non-coding CI01000072 null 1584297 ~ 1740592 (-)