G107148 (nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737)


Basic Information

Item Value
gene id G107148
gene name nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16089757 ~ 16236341 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU158282
GCAGGACTCAAGAGCACTAGAAAACCGCACATGTGGGGAATAGACGCTGTCAGCCCCATTCACCGTTccggtttattttattttattttttttacatctcaATTGTTCGTAAAGAGAAACACCATATACGCGTCTCCGACTGTTCCCTGAATGCAGCATAATTTTCAACGggattctcttttttttcccccaccatCCGCGCAGGACCATCACCAGCTGACCCTGTGGACAGAATTACTGGATGTAAGCAGTGATTTCACACACAACCCTGGAGCTTTGAAGTACAAATCCAGTGACATGGAATCCCACAAGACTTGACTACATCACTATCCTGTACTTATCTTAACAATGGCAAACATGATTTTAAACTACATTCATGCTTAGCTCTTGCCTTCTTTATGGGGGAATGGCTTGTGAATCTACATCACAACTTTCttttacctgaaaaaaaaaaaaggtttggaagCTAAAGGTCTCTTGGCAGAACGTAACAGAAATATTTTCCCTCTATTGTGGTGGCCAACCATACAAGTGACTATAGTATTGAACATGACTCATGGGGAAGAGCCTGGCCCTGAAACACACCAGGATTCTGCTGTATTAACATATCTGGAAGGCTTACTCATGCATCAGGTAGCAGGAGGACAGGGTGCGGCAGCAACTCAAAGTGGAGAGCAGAGGAATAAGGATGGAACAGGGCATGCACAGCCTAGTCATGGCACTCGGCAGGAGCAGAAACGAACAAATTCCCACTGTGGAGCCTCACAGCACCTCAGAAAGGCTCGTCTTCTTAACTCAGAGGCCTGGACAGAAAGTGAGACTCAACGGACATCAGCACCTTCCGTTGCACTCAATGGGCAAAGTGAAGACCAACACAGTGGCCAGAACGGCACCTCCCAGGATAAAGGAGAGAGTACACTTTTAGCTAGTTTGCTGCAGTCTTTCAGTTCTCGACTTCAAAACGTGACCCTGCCACAGCAGATTATCCAAGGCTTGAGGCCACCGGATGCCCCCTGCCAGATAAGCAAGCCTGTACAAGAAGACAGGGCAGATGTGCCTTGCCACAGACCAGCCTCAAGCCACCTCAAAGGGTTAGTGAGCAAGAGCAAAATGCAGAATCACAGCAACAGTGTGCCTTATCA
>TU158283
GCAGGACTCAAGAGCACTAGAAAACCGCACATGTGGGGAATAGACGCTGTCAGCCCCATTCACCGTTccggtttattttattttattttttttacatctcaATTGTTCGTAAAGAGAAACACCATATACGCGTCTCCGACTGTTCCCTGAATGCAGCATAATTTTCAACGggattctcttttttttcccccaccatCCGCGCAGGACCATCACCAGCTGACCCTGTGGACAGAATTACTGGATGTAAGCAGTGATTTCACACACAACCCTGGAGCTTTGAAGTACAAATCCAGTGACATGGAATCCCACAAGACTTGACTACATCACTATCCTGTACTTATCTTAACAATGGCAAACATGATTTTAAACTACATTCATGCTTAGCTCTTGCCTTCTTTATGGGGGAATGGCTTGTGAATCTACATCACAACTTTCttttacctgaaaaaaaaaaaaggtttggaagCTAAAGGTCTCTTGGCAGAACGTAACAGAAATATTTTCCCTCTATTGTGGTGGCCAACCATACAAGTGACTATAGTATTGAACATGACTCATGGGG

Function

symbol description
nrip1a Predicted to enable signaling receptor binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including forerunner cell group; hatching gland; mesoderm; nervous system; and optic vesicle. Human ortholog(s) of this gene implicated in CAKUT and osteoporosis. Orthologous to human NRIP1 (nuclear receptor interacting protein 1).

NR:

description
PREDICTED: nuclear receptor-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158282 True 1142 TUCP 0.47 3 16089757 16236341
TU158283 False 562 lncRNA 0.42 2 16089757 16115455

Neighbor

gene id symbol gene type direction distance location
gucy2f gucy2f,LOC107714181,LOC107666202,LOC107589733,LOC107682463,LOC106613073 coding upstream 93765 15986079 ~ 15995992 (+)
rap1gap2a rap1gap2,rap1gap2a,LOC107666198 coding upstream 120554 15910486 ~ 15969203 (+)
zgc:113149 LOC107669760,LOC107714186,LOC107587722,LOC107756630 coding upstream 183361 15901294 ~ 15906396 (+)
zgc:101731 zgc:101731,LOC107587749,LOC107669759,LOC107757427,LOC107714187,LOC107683430,LOC108425805 coding upstream 189123 15893397 ~ 15900634 (+)
capns1b capns1,capns1b,LOC107669758,LOC107587742,LOC107682413 coding upstream 196507 15889354 ~ 15893250 (+)
LOC122358452 zgc:153372,LOC107682590,LOC107587555,LOC107757291 coding downstream 8447 16244788 ~ 16248630 (+)
nufip2 nufip2,LOC107714169,LOC107666195,LOC107592914,LOC107756500,LOC107587528,LOC107682614 coding downstream 186956 16423297 ~ 16433885 (+)
nlk2 nlk2,nlk,LOC106581270 coding downstream 206565 16442906 ~ 16508088 (+)
nos2b nos2,LOC107588374,LOC107666185,LOC107756441 coding downstream 278007 16514348 ~ 16525658 (+)
mrps23 LOC107746708,LOC107588353,LOC107666184 coding downstream 289384 16525725 ~ 16528161 (+)
G107141 NA non-coding upstream 20016 16069484 ~ 16069741 (+)
G107136 LOC107588392,LOC107666206,LOC107756564,LOC107682478,LOC107589735 non-coding upstream 87626 16000215 ~ 16002131 (+)
G107113 NA non-coding upstream 195133 15894133 ~ 15894624 (+)
G106941 NA non-coding upstream 451728 15637174 ~ 15638029 (+)
G106924 NA non-coding upstream 518595 15502558 ~ 15571162 (+)
LOC122358549 NA non-coding downstream 100473 16336814 ~ 16357622 (+)
G107232 NA non-coding downstream 108041 16344382 ~ 16344655 (+)
LOC122358872 NA non-coding downstream 292939 16529280 ~ 16578656 (+)
LOC122359009 NA non-coding downstream 546738 16783079 ~ 16787674 (+)
G107305 NA non-coding downstream 621894 16858235 ~ 16859096 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 46492 16004869 ~ 16043265 (+)
G107107 NA other upstream 206247 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 377318 15706513 ~ 15712439 (+)
tbx4 tbx4,LOC107548556,LOC107664909,LOC107757041,LOC107685071,LOC107743740,LOC107589698,LOC106612866 other upstream 1161532 14912911 ~ 14928225 (+)
aifm4 aifm4,LOC107585620,LOC107685174,LOC107664913,LOC107743746 other upstream 2127950 13957197 ~ 13961807 (+)
lyrm9 lyrm9,LOC107756492 other downstream 276967 16513308 ~ 16514221 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 1553504 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 1595731 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 1808676 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 2520002 18756343 ~ 18758836 (+)

Expression


Co-expression Network