XLOC_006690


Basic Information

Item Value
gene id XLOC_006690
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 30549409 ~ 30551509 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013838
GCTCTGACGATTCTTCTGATGCCGCAACAAAAGCAGTCGTCCCAGCTCCTCGCACCAGGACGATAGGAGAGCTAGAGGAAGAAACAAACAGAGAGAACGGCAGATCAGCAAAGATCTTTGGCAAGGACACCATGCACATTTTAGCTTAACAGCAATCTTTCTCATTTTAGCTATTTAGCAGAAGTAAAACTCACTGACATGATGGGAAAGGTTGTTTCTAAACTGTTCTGATTTTTGTTGTCCACTGTGCTATTATGCAGCTGGAAGGCTATTCTATAGGTCTATCCTTTAATCTAAGAGACTGTTTACACGACCAAGTTTTTAGCAAAATATTCGAAACTTTTTATAGATTTTACCTGTTCATTTACATGACAATGATGTTATAGAGACTCAAAATGGGTCtcaaaaaagactttttttttgttttgaaaatggcACCGTTGTGTCAGTGTAAACACCTGAAAATtagagtttttaaaaatgataacaaTGCGTGTGCATGGTTAATGTTTAGGTGTAGATCAAAGGCAagcgaaaacaaaaaataacgCTGGAATATGTGCTAGTGTTGTTGCTAAAGTGTTTGACTTTGGCAATACAAAGTAtggatttacttcacattacagCCGACAGCAGAGACACATCTAGCAAATATGGCAAATTCTACCTCACCCCCAACTGCACATCATTACCTACCTACAGGTACTGTTTACTAAGGAGACCGTGCCAAATACTGGCCTTTCCTATGTTATACAgaagttttatttgctttcacAATTATGTAAAGATATCGTTTTCAAAATGTTGTCATGTAAACGTGAAACAGGGGAAAAACTTTCCTGTTTTGGCTATAGAATTGCCGTGTAAACGAAGCATAAATCTATGGAATGTGGCATCTGTTTTAGTGTAAATCATAAAACTGATAGCTTTGCACAATCTCTTGCTTAAGTATAACAATTTGAGTTATCACTTATGTTTAAATGTTGGTATTTCTTAGGGTTAGCAGCTTGTTCAAATCTCTAACCCTCAATAAGCTGGAGGTTTGTCCCACTTTTGAAGTGTCTGgagtttagctctaaccagcACGGACGTTTCTACTTAGTCTAAAGATTTTGCCTGATCTGATTCACATGTGTTTAAATAGTATTACTTCACAATTGTGGCAATCCATAAACAGCTCACCCCTAATATAAACAATGGTGAGAAAGAtgtcaaaaatattgcaatgttttaaTCAGTTCATATCTTCGCCACTAGAGGTCACTACTATTACAGTAGAAATGCACGAGTGCCTGGGATCGTCTTTAACAGCCTGTCATTATGCTTCTCATAGGATCATATGCTTTTGGTCTGCAGTGCACTTTGAGCAGCGATCCTACCACAGAAGAGCTGTCTTCCCCTGTCGTGAAGGCAGAATGACGAAGACGGGGAGAGAAAGAGCAAGAAATGGAAGATGAAAATCAGTGCTGAGGACAGTGAGTCATGCCGGGGATGTGTCCTGGCAGCACTTTACTCCTGTGAGGGGTGACAAAATGAGCCTCTCGCCATGGTGATGGAGTCGTTTCGGGATGGCAGCAGTTGGCACATAGCCAGATCCTGGTCTAATCGATTCTACACGCCGCATATGGCTGAAGTAGCGCTGCATTTAAGTGCTCTTCATACAAATGCCCCTCACACTTTGCAACTGACACTATTTAGATAGTCATTACTAGCTGAGTCATTGATGGCAAGAGTAAAATTTAGATTCACAataattaattatcaaataactGTTGTGTGTTTTATAGACTAGCATTTTTGTAAGAAAATTTGATAGATTTTGTCATTGTAAATGGTCACTGTCATATTTTTTGACATGTATTAACCGTAACAagccatttaattaaaacaatgtaatgaaattaaaatgaacaaaataacttttttaggttccaaaaaataatacttaaaaccAGGTTATCCTGTCATGATATTCTTTTCTTTTAATACACTTTAATTTTATGCTAACAAGGTTCTTATATTTAACATCTTGTATTGACCTATTGCTAAAAACAAGGGGGAAATGAATTATGATAATAAAAGGCAAACACCCTGAGAACTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013838 True 2101 lncRNA 0.37 1 30549409 30551509

Neighbor

gene id symbol gene type direction distance location
XLOC_006689 NA coding downstream 298845 30245673 ~ 30250564 (-)
XLOC_006688 ppa1b coding downstream 387725 30152217 ~ 30161684 (-)
XLOC_006687 sar1ab coding downstream 398817 30144937 ~ 30150592 (-)
XLOC_006686 tysnd1 coding downstream 406282 30135675 ~ 30143127 (-)
XLOC_006685 trmt2b coding downstream 514655 30033036 ~ 30034754 (-)
XLOC_006691 NA coding upstream 17058 30568567 ~ 30571143 (-)
XLOC_006692 zcchc24 coding upstream 27751 30579260 ~ 30645965 (-)
XLOC_006693 CT025887.1 coding upstream 80596 30632105 ~ 30632219 (-)
XLOC_006694 si:dkey-275b16.2 coding upstream 103663 30655172 ~ 30662403 (-)
XLOC_006695 rassf4a coding upstream 113310 30664819 ~ 30700460 (-)
XLOC_006471 BX537274.2 misc downstream 20284504 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 29723184 825904 ~ 826225 (-)
XLOC_006682 NA non-coding downstream 563907 29984877 ~ 29985502 (-)
XLOC_006680 NA non-coding downstream 606447 29937395 ~ 29942962 (-)
XLOC_006679 NA non-coding downstream 746400 29709345 ~ 29803009 (-)
XLOC_006678 NA non-coding downstream 847468 29506613 ~ 29701941 (-)
XLOC_006698 NA non-coding upstream 257454 30808963 ~ 30812183 (-)
XLOC_006699 CR762493.2 non-coding upstream 303810 30855319 ~ 30872439 (-)
XLOC_006703 BX005005.3 non-coding upstream 491005 31042514 ~ 31051156 (-)

Expression


Co-expression Network