LOC122359009


Basic Information

Item Value
gene id LOC122359009
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 16783079 ~ 16787674 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU158446
GGCTCCCTCTCTTGCGCTATTTAAGCTTCACCTATCCTGAATATATAAGgttGTTTGGCAGTTTCTGAGGTGATAAACATCAGATACAGGTATCATCTTGGCATTTAAACTAGATAGAACTAGAGTAAAAATGGACTGCACATGTTAGACAGCAGGGTAACAGGGTTGAGGGAAACTTTTATTACGAACACTGGTATAATTAAATTGCCATGTTATACATGTACAGCAACTAACCGCTTTACAAAAAAGCAAGTAATACAATATCACATATATTTacacttgtatttatataccttccaattttacataaacatatttacagGTGACAGATACATTGTTTACAGATGaccaatgcaattaaaaatgtggCAATGCATCAGACGAACacattttgaattatataaaataaaccactttttagtctgtttatgATGAGAACATTAcatatgcaatttaaaatgcttAGGGGCATGTCGTGTGTCCTATCCGCCTGACACGGCAGTCAAGACTGTGCCTTCATTATTGTCTTAAAGTTTTGACGCATCAGATCAAGTCAGTTTTAGATTGGTAGTAGCAATGCAACATCAAAGATTAAAGGAAAAGGAGTTATATTCTGGTTATTAGTAAtggatgcaaaaaaagaaaacaaatcttacATTTCAAACGCTTGACTGGGTCATTATGTTCcttcatattttcaatttaagaACTGTAAATTTGACATGCCATTACGACACCGAGAAGGAATAAGCATTTCAAGTTTGatttttgatcaatgtaatCTGAAATCTGCTGTCGGGATGACATTTCACTGTAAATACTAAGTGCCCTAAAATGACCACAAGTCAGCATGAACGTACATTTTTGGATCTGCAGTATAGTACGTAGTAAAACATACGAAAACgtaaaataaatctacaaacGAAATGGGAAAATGACATTGATTTGGTCCCAATTTTAAGTGCGAAACACTTCTCAATGCAATCCtttcagaaacataaaaataaatttatgcataaatattccGTCCTCAAACATTTGGCAGGTACCCTTCTTTAGTAATACAAGTTTCCCTTTAATAAGCATTTCAAAGAGACAATGTACTTGAGTCTGTTACTAGGTACGCTACCGTTTCCTCCTTTGTAGATTTGCAGATTGGCATAATGACAGAAACGTAATGCAGAAAAcatattgcacacaaaaaaataaaataatcgcCCGCTTCAAAATTTGATGGCCATCTTATGTTAAATACACAGTGAAGCCCTGAAAATGGCATGTTAAGTCAAACTTAAATGGCACAATTGTGTTAAATTTTGCAATTCACTAGTTAGGCGACGAGTGAGAAAACGATTAAattaaactgcaaaaacaagGTTACAAAGCTATTGAGATCTGCATGGAAGAAATAATTAAGGCATACGACGTAGACGAGACagacataaaatatacaaaatggaGTTCACAACAGTTTCCCCTCACAATATTGCAAACTAGTCTTTGGTGCAATGTTACTATGTCAGCTTGTGGTAGGATTGGGATTCCTGTGCCGTACGTGAGATATTAGTGAGACGGGAACAGGAAAAGGTAAAAGTGTGCATGGAAATTTCCTGATCACACACCTAAATCATGTGCAACTTGTATACACATAGTGTTCAacgaaacaaataaaaaacatattgcaCCACAGTGAGACAATGCTAAAACATGTATATTAATGCCAATTCGTCGTGTTTGATTTGTGCATTTCgggaacaaaaaaacaaaacaaaaataaacatactcaTCCGCTGCTCttctagaatttttttttttttttttttttttttttgactgatgaTAACGATCTCCAAGCAAACCTTCATGTGATCTCCGAAAACATTATCTacatttacagaataaatatttagatgcTGCAGTATGATATTCTCGTAGTTGATGGTCACATGGTACAGTTTACACCGTAGCGACGTATAGACAATATGGTAAATGTTAAAGCCACGGTGTTTTCGTAATTAGTACCTGTTTTCCCTTCCTTAGCAAGGTCTTGCCTATTTTACAAACTATACACAGCTGAAAACCCTGACAAAGGCACACAATGGATAAAAGAAGAACCCAAAACATGTGATCGTTATTATCGTATAGTACACATATAATCATGGATAGCCATCCAGATTTCAAGCCTGTGGATATCAAGGACAGGCCGCGCGTCCATCCCGTATTGGGTCCAGGACAAAATGGAAAAAGGCCGGATGCCAGGCCAGGATAATGAGCCACACGGTTGGTCATCTGTTCGCTGTTTGTAGTGGTTGATCAGATCAGTTTCTCATTCTTGTGTTTCTTACGGACATCGATGAGGACATAATCTCGAGTTTGTGCAAAAAAACGAAGAGTGGACGCCTCAACCGGACAGGTTTAGCATATCAACGTGGTCGGTCCCTAGATATTTTCGATGTTGAGTGCAACACAGAGTTCAGTGCATTCTCCTGAAGTAGTTCGTTTAGGCAAGTGTGTGGCAAGCTTCAactggtataaaaaaaaaaaaaaacaaaacaaaacgctcaAGCGGTTCTTCAATGCGGGAACCTTGTTAATTGGACGACAGAAAGCAAAAAGGATTCGTGGAGAAGAACGATGGCCGTGGAGTAGGTAGAAACGCTCCCGATCTTCTCAGACGATCTTTTTGATGCTCGGCCGTTTGAAGCTGCCTGCACTGCGCTGCTTCTGTACCTGGCTGGCTGACCCGTGTCGAGCTCGCCCACTGGTGGAGAGAGTCGAGGTGGGAGAAATCTCAACGTTCTCCTTGT
>XR_006252675.1
aaaaaagaaattataacgGCTTCTAACCGGTCCTAAGCTGGCAGGTCCAGCAACAAATCAGCTAGCAGCTGGTCAAACTACCATCTTAAAATGGTAAAGATGGCTTGTGGAATATGTAACTTAACATGACCAACCAGCAACTGATCAACTTAAAAACTACGTTAGGTAATGCTACTATGTGCCAAAACATGGTCATAGCAGCTGAAGGTGATCACTATGATTTTTTGCAAAATAGCATAAGGTCTATTAGCTAATGTTTATCGATTTAACCGCGGCTCCTTAATTAGTCGACTTCAATTAACGTACGAGACCTGTTATTTATCCTTTAGAGTTGAACTCAGATTTGGCGACACCGTTAGCCGCTATAGCTAAAGCGTTCCGGGCGCTTTGGATAGCGGGTAGCACTGGCGCAATGTCAAACGCACGCTGTCGAATCAATGAAGGGGGAAATCATTTTAGAAGATGAAATGGCTGCATGCGAGATGGTTCAAATCAGCTTGGATGTCAAGCAAAAGGCGACGGGAGGACTAATCAGAGAGGCGGCTAAAATGGGCTCCCTCTCTTGCGCTATTTAAGCTTCACCTATCCTGAATATATAAGgttGTTTGGCAGTTTCTGAGGTGATAAACATCAGATACAGGTATCATCTTGGCATTTAAACTAGATAGAACTAGAGTAAAAATGGACTGCACATGTTAGACAGCAGGGTAACAGGGTTGAGGGAAACTTTTATTACGAACACTGGTATAATTAAATTGCCATGTTATACATGTACAGCAACTAACCGCTTTACAAAAAAGCAAGTAATACAATATCACATATATTTacacttgtatttatataccttccaattttacataaacatatttacagGTGACAGATACATTGTTTACAGATGaccaatgcaattaaaaatgtggCAATGCATCAGACGAACacattttgaattatataaaataaaccactttttagtctgtttatgATGAGAACATTAcatatgcaatttaaaatgcttAGGGGCATGTCGTGTGTCCTATCCGCCTGACACGGCAGTCAAGACTGTGCCTTCATTATTGTCTTAAAGTTTTGACGCATCAGATCAAGTCAGTTTTAGATTGGTAGTAGCAATGCAACATCAAAGATTAAAGGAAAAGGAGTTATATTCTGGTTATTAGTAAtggatgcaaaaaaagaaaacaaatcttacATTTCAAACGCTTGACTGGGTCATTATGTTCcttcatattttcaatttaagaACTGTAAATTTGACATGCCATTACGACACCGAGAAGGAATAAGCATTTCAAGTTTGatttttgatcaatgtaatCTGAAATCTGCTGTCGGGATGACATTTCACTGTAAATACTAAGTGCCCTAAAATGACCACAAGTCAGCATGAACGTACATTTTTGGATCTGCAGTATAGTACGTAGTAAAACATACGAAAACgtaaaataaatctacaaacGAAATGGGAAAATGACATTGATTTGGTCCCAATTTTAAGTGCGAAACACTTCTCAATGCAATCCtttcagaaacataaaaataaatttatgcataaatattccGTCCTCAAACATTTGGCAGGTACCCTTCTTTAGTAATACAAGTTTCCCTTTAATAAGCATTTCAAAGAGACAATGTACTTGAGTCTGTTACTAGGTACGCTACCGTTTCCTCCTTTGTAGATTTGCAGATTGGCATAATGACAGAAACGTAATGCAGAAAAcatattgcacacaaaaaaataaaataatcgcCCGCTTCAAAATTTGATGGCCATCTTATGTTAAATACACAGTGAAGCCCTGAAAATGGCATGTTAAGTCAAACTTAAATGGCACAATTGTGTTAAATTTTGCAATTCACTAGTTAGGCGACGAGTGAGAAAACGATTAAattaaactgcaaaaacaagGTTACAAAGCTATTGAGATCTGCATGGAAGAAATAATTAAGGCATACGACGTAGACGAGACagacataaaatatacaaaatggaGTTCACAACAGTTTCCCCTCACAATATTGCAAACTAGTCTTTGGTGCAATGTTACTATGTCAGCTTGTGGTAGGATTGGGATTCCTGTGCCGTACGTGAGATATTAGTGAGACGGGAACAGGAAAAGGTAAAAGTGTGCATGGAAATTTCCTGATCACACACCTAAATCATGTGCAACTTGTATACACATAGTGTTCAacgaaacaaataaaaaacatattgcaCCACAGTGAGACAATGCTAAAACATGTATATTAATGCCAATTCGTCGTGTTTGATTTGTGCATTTCgggaacaaaaaaacaaaacaaaaataaacatactcaTCCGCTGCTCttctagaatttttttttttttttttttttttttttgactgatgaTAACGATCTCCAAGCAAACCTTCATGTGATCTCCGAAAACATTATCTacatttacagaataaatatttagatgcTGCAGTATGATATTCTCGTAGTTGATGGTCACATGGTACAGTTTACACCGTAGCGACGTATAGACAATATGGTAAATGTTAAAGCCACGGTGTTTTCGTAATTAGTACCTGTTTTCCCTTCCTTAGCAAGGTCTTGCCTATTTTACAAACTATACACAGCTGAAAACCCTGACAAAGGCACACAATGGATAAAAGAAGAACCCAAAACATGTGATCGTTATTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158446 True 2807 lncRNA 0.38 2 16783630 16787674
XR_006252675.1 False 2690 lncRNA 0.36 2 16783079 16787006

Neighbor

gene id symbol gene type direction distance location
mrps23 LOC107746708,LOC107588353,LOC107666184 coding upstream 254918 16525725 ~ 16528161 (+)
nos2b nos2,LOC107588374,LOC107666185,LOC107756441 coding upstream 257421 16514348 ~ 16525658 (+)
nlk2 nlk2,nlk,LOC106581270 coding upstream 274991 16442906 ~ 16508088 (+)
nufip2 nufip2,LOC107714169,LOC107666195,LOC107592914,LOC107756500,LOC107587528,LOC107682614 coding upstream 349194 16423297 ~ 16433885 (+)
LOC122358452 zgc:153372,LOC107682590,LOC107587555,LOC107757291 coding upstream 534449 16244788 ~ 16248630 (+)
LOC122359007 NA coding downstream 17750 16805424 ~ 16807691 (+)
omgb LOC107587445,LOC107672106,LOC107746657,LOC107592923,LOC107682744,LOC107756362 coding downstream 21563 16809237 ~ 16816847 (+)
LOC122359144 LOC107588342,LOC107672102,LOC107683437,LOC107757408,LOC107592926,LOC556987,LOC108425804 coding downstream 170485 16958159 ~ 16959238 (+)
LOC122358372 or116-1,LOC107683394,LOC107757262,LOC107592963,LOC107757255,LOC107592965,LOC107683395 coding downstream 178759 16966433 ~ 16967368 (+)
LOC122358381 nlk1,nlk,LOC107678874,LOC107582859,LOC107754939,LOC107684639,LOC108410603 coding downstream 204121 16991795 ~ 17017279 (+)
LOC122358872 NA non-coding upstream 204423 16529280 ~ 16578656 (+)
LOC122358549 NA non-coding upstream 425457 16336814 ~ 16357622 (+)
G107232 NA non-coding upstream 438424 16344382 ~ 16344655 (+)
G107145 NA non-coding upstream 616074 16139813 ~ 16167005 (+)
G107141 NA non-coding upstream 713338 16069484 ~ 16069741 (+)
G107305 NA non-coding downstream 70561 16858235 ~ 16859096 (+)
G107307 NA non-coding downstream 72030 16859704 ~ 16860627 (+)
G107308 NA non-coding downstream 73096 16860770 ~ 16860988 (+)
G107309 NA non-coding downstream 73513 16861187 ~ 16861477 (+)
G107272 LOC107592917,LOC107757278,LOC107682697 non-coding downstream 92983 16880657 ~ 16882321 (+)
lyrm9 lyrm9,LOC107756492 other upstream 268858 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 546738 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 739814 16004869 ~ 16043265 (+)
G107107 NA other upstream 899569 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 1070640 15706513 ~ 15712439 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 1002171 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 1044398 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 1257343 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 1968669 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 1971908 18759582 ~ 18760497 (+)

Expression


Co-expression Network