G107450 (LOC108433790)


Basic Information

Item Value
gene id G107450
gene name LOC108433790
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17454294 ~ 17457686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU158706
attttttttttttttttttttttttttaaaaaaagaaatgtttacttCAGACACATTCTTGAATGTAAAACAAAGCTGCATTCTTGTAATTAGAGTGGTATTCAAAGTACAGTTAAAGGACCTTATGACGGCAAATacgaaaaatatttttaaaaactaatatgaTAGTGCACTACAGATCTACATAAACCAGATAATTGTGCTATGCACCTTCAGAGGAACAGTTCAATTCATATCATTCAACCTTAAACTGTTCCTGGTAAAGAACTACcactaacaaaaacaaagataaaaaaaatcataagacTGAAGACACATAGTGTTAACTTTACAAAAGGAGAATAacactgtacatcttaaaaacGCCGCATATACACAGCCTAACAATTCTTGTTTCTGCTGTATTACGCTTGAAGATGCGAATCGTGTACATTTGGGTTTATGGCATGAACAAGAACCTAGGCTACATAAGTAGCTAATCTACTCATCGTCCTCTTCCTCGtcgtcttcctcctcctcctcgtcttcTTCATTTTCATCCTCGTCATCGTCCTCCCCACCATCTTTTTTGGACAAGCCTGCGATTCCCTTTGTACGGTAAAGAGCAATCTTGTCGTACTTCTCCTTCAGCTTTGCTGCTTTCTTCTCGTAGGGCTGCTTCACTTCGGCCGATGAGCTATTCCACATTTCTCCAAGCTTTTTGGCAATGTCTCCGATGGACAGACCTGGGTTCTCCCCCTTAATCTTAGGGCGGTAGTCACCACAGAAAATGAAGAACGCTGACCTTGGGGAGGAATATTTCATTAAACCAAACTATATTGAagaaattcacattttcaatAGGAGTGCACGGAGTGAACATACGGAGGTCTCTTAGGTGCGTTGGGATCCTTAAACCGCCTCTTCTTCTCACCCTTTGGTGGGATGTAGTTCTTCATTTCCCTCTCATAGCGAACCTTATCTTGCTTGGCCATATCCTCGAATTTACCCTTCTCTTTGGCAGACATTtACCTTCCATCGCTCTGAACACTTCTTGGAGAATTCAGAGAAGTTTACAGAGGCTTCGGGGTGCTTCTTCTTGTGCTCTTCACGGCAGGTTTGCACAAAGTAGGCATAAGAGGACATTTTTCCTCTGGGCTTCCTTGGATCTTTACCCATCTTTACCaactgggaaaaaaagatattctcaaataaatgaaagttaaaTGCTA

Function

NR:

description
PREDICTED: high mobility group protein B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158706 True 1211 lncRNA 0.40 4 17454294 17457686

Neighbor

gene id symbol gene type direction distance location
LOC122358675 LOC107757141,LOC107558992 coding upstream 18695 17434652 ~ 17435599 (+)
LOC122358674 NA coding upstream 21054 17432251 ~ 17433240 (+)
LOC122359453 or102-1,LOC107588280,LOC107746700,LOC107704728,LOC107657422 coding upstream 24163 17429181 ~ 17430131 (+)
LOC122359267 or103-4,LOC107559004,LOC107757158,LOC107683403,LOC107746667,LOC107746666,LOC107668350,LOC107587955 coding upstream 28822 17424511 ~ 17425472 (+)
LOC122359481 or103-2,or103-5,LOC107746667,LOC107746666,LOC107587991,LOC107668350,LOC107588291,LOC107757158 coding upstream 39313 17414019 ~ 17414981 (+)
LOC122358547 tex26 coding downstream 2741 17460427 ~ 17463123 (+)
wdr95 wdr95,LOC107746697,LOC107704726,LOC107587932 coding downstream 5617 17463303 ~ 17478201 (+)
b3glcta b3glct,b3glcta,LOC107756277,LOC107682850 coding downstream 31764 17489450 ~ 17549642 (+)
rxfp2b rxfp2,rxfp2b,LOC107558987,LOC107683406 coding downstream 92090 17549776 ~ 17566071 (+)
frya fry,frya,LOC107559014 coding downstream 114739 17572425 ~ 17623054 (+)
G107447 NA non-coding upstream 139633 17309345 ~ 17314661 (+)
G107443 NA non-coding upstream 253357 17200408 ~ 17200937 (+)
G107440 NA non-coding upstream 254681 17198455 ~ 17199613 (+)
G107438 NA non-coding upstream 255964 17196154 ~ 17198330 (+)
G107437 NA non-coding upstream 258409 17195503 ~ 17195885 (+)
G107468 NA non-coding downstream 22162 17479848 ~ 17480048 (+)
G107477 NA non-coding downstream 108507 17566193 ~ 17566876 (+)
G107547 NA non-coding downstream 358446 17816132 ~ 17816825 (+)
LOC122358482 NA non-coding downstream 400221 17857907 ~ 17859804 (+)
LOC122358481 LOC107575069,LOC107748074,LOC107682967 non-coding downstream 596582 18054268 ~ 18072232 (+)
lyrm9 lyrm9,LOC107756492 other upstream 940073 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 1217953 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 1411029 16004869 ~ 16043265 (+)
G107107 NA other upstream 1570784 15881114 ~ 15883510 (+)
G106937 eml2,LOC107669753,LOC107743713,LOC107548590,LOC107685092 other upstream 1741855 15706513 ~ 15712439 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other downstream 332159 17789845 ~ 17811203 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other downstream 374386 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other downstream 587331 18045017 ~ 18046904 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 1298657 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 1301896 18759582 ~ 18760497 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location