G107558 (si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069)


Basic Information

Item Value
gene id G107558
gene name si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 17832072 ~ 18116953 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU158844
agagagagagagaataaatagACAGAAacaaagctgataaaaacagatGTACGGAGACATGCTGCTACATAtacaaaaagctaaaaatggacttaattacatgttttaataaacatgccCCAACACATCCATAGAGAAAGATCCTGTTTATGGAAACTTTTTTCTGGGCTCTGTCTACTGGTGTGTTTTCTGgctatatgtttttatatgggaaatgaaagaaagaaacgcCCTTCACCCAGATTTCTGTCTCAGCACAGTGCAGAAGGCCACAAATCTTCAAACTCAGGAATAGGTTTAAATGGGTTACAACAGGCTGTTTACTGGGCAGAGCCTGACAGACCAATCACAGATGTGTCCATGAGTACTAGTCCAGCTCACACCACATTCATCATAGAGAACCTGAAAGAGAGCTACCAAATTGGTGAGGAGCTTATTGTTACAGTGCAAGCAAAGGACTTTGGTAATAAATCTAAGAGTTATGGAGGTGACTTTTTTCAAGCCAAGCTGTTCTCGTCTGATCAAAAGGCCAGTGTTTTTGGGGAGGTGGTGGATCTACTCAACGGTTCCTACTCTGTTCGTTTTCTCCTGCCGTGGGTCGGTGAGGCTCAGGTAGCTGTGCGTCTAATTCACTCCAGTGAAGCTGTGCAGGTCCTAAAGCGTCACAGAGATACTGACTCTGACAGAGTGTACTTTAATGGATAT
>TU158846
agagagagagagaataaatagACAGAAacaaagctgataaaaacagatGTACGGAGACATGCTGCTACATAtacaaaaagctaaaaatggacttaattacatgttttaataaacatgccCCAACACATCCATAGAGAAAGATCCTGTTTATGGAAACTTTTTTCTGGGCTCTGTCTACTGGTGTGTTTTCTGgctatatgtttttatatgggaaatgaaagaaaaagcgCCCCTTCACCCAGATTTCTGTCTCAGCACAGTGCAGAAGGCCACAAATCTTCAAACTCAGGTTCTCTTACAAGTTTCTGTAACTAATAGGTCTCAGTCTCAGTCACTAATAAACTCTTTTTACTCTGAATTAGGAATAGGTTTAAATGGGTTACAACAGGCTGTTTACTGGGCAGAGCCTGACAGACCAATCACAGATGTGTCCATGAGTACTAG
>TU158847
CTGGGCAGAGCCTGACAGACCAATCACAGATGTGTCCATGAGTACTAGTCCAGCTCACACCACATTCATCATAGAGAACCTGAAGAGAGCTACCAAATTGGTGAGGAGCTTATTGTTACAGTGCAAACAAAGGACTTTGTGTAATAAATCTAAGAGTTATGGAGGTGACTTTTTTCAAGCCAAGCTGTTCTGGTCTAAAAATAAGGCCAGTGTTTTTGGGGAGGTGGTGGATCTACTCAACGGTTCCTACTCTGTTCGTTTTCTCCTGCCGTGGGTCGGTGAGGCTCAGGTAGCTGTGCGTCTAATTCACTCCAGTGAAGCTGTGCAGGTCCTAAAGCGTCACAGAGATACTGACTCTGACAGAGTGTACTTTAATGGATATTATGAGGGACCAGGACCAGATAAGTCCAGGTTGAGTGAAATGGTGAACTGTAATGTGAAGTGGGACAAGAATGGACTAGAGAGCATGGGAACCAAAGACTGTTGCTGTGAATACAACGATCC
>TU158850
agagagagagagaataaatagACAGAAacaaagctgataaaaacagatGTACGGAGACATGCTGCTACATAtacaaaaagctaaaaatggacttaattacatgttttaataaacatgccCCAACACATCCATAGAGAAAGATCCTGTTTATGGAAACTTTTTTCTGGGCTCTGTCTACTGGTGTGTTTTCTGGAATAGGTTTAAATGGGTTACAACAGGCTGTTTACTGGGCAGAGCCTGACAGACCAATCACAGATGTGTCCATGAGTACTAG
>TU158854
agagagagagagaataaatagACAGAAacaaagctgataaaaacagatGTACGGAGACATGCTGCTACATAtacaaaaagctaaaaatggacttaattacatgttttaataaacatgccCCAACACAGCCAGTGTTTTTGGGGAGGTGGTGGATCTACTCAACGGTTCCTACTCTGTTCGTTTTCTCCTGCCGTGGGTCGGTGAGGCTCAGGTAGCTGTGCGTCTAATTCACTCCAGTGAAGCTGTGCAGGTCCTAAAGCGTCACAGAGATACTGACTCTGACAGAGTGTACTTTAATGGATATTATGAGGGACCAGGACCAGATAAGTCCAGGTTGAGTGAAATGGTGAACTGTAATGTGAAGTGGGACAAGAATGGACTAGAGAGCATGGGAACCAAAGACTGTTGCTGTGAATACAACGATCC

Function

symbol description
si:dkey-285b23.3 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158844 True 705 TUCP 0.42 5 17832072 18116953
TU158846 False 444 lncRNA 0.38 3 17832072 17837858
TU158847 False 504 TUCP 0.46 2 17859911 17860653
TU158850 False 274 lncRNA 0.38 3 17832072 17837858
TU158854 False 426 lncRNA 0.44 2 17832072 17860653

Neighbor

gene id symbol gene type direction distance location
fhdc4 LOC107752494,LOC107704784,LOC107682937,LOC107559008,LOC107587915 coding upstream 44203 17778597 ~ 17787869 (+)
arfip2a arfip2a,LOC107587234,LOC107704786,LOC107559011,LOC107752500,LOC107682914 coding upstream 54519 17769204 ~ 17777553 (+)
dchs1a dchs1a,LOC107587256,LOC107558986,LOC107683408,LOC108433795,LOC108278281,LOC107704701 coding upstream 81705 17660921 ~ 17750367 (+)
brca2 brca2,LOC107752535 coding upstream 196248 17623734 ~ 17635824 (+)
frya fry,frya,LOC107559014 coding upstream 209018 17572425 ~ 17623054 (+)
trpc4b trpc4b,LOC107752869,LOC107704724,LOC107588262,LOC107730855,LOC107683445,LOC108433784 coding downstream 104319 18221272 ~ 18237305 (+)
postnb LOC107704781,LOC107752481,LOC107587216,LOC107730854,LOC107582252,LOC107682985 coding downstream 123696 18240649 ~ 18254051 (+)
spartb spg20,LOC107752446,LOC107683015,LOC107730857 coding downstream 153083 18270036 ~ 18283210 (+)
dclk1b LOC107752421,LOC107704780,LOC108433804,LOC107683036,LOC107730822,LOC107582281 coding downstream 168006 18284959 ~ 18317179 (+)
mab21l1 mab21l1,LOC107730834,LOC107683054,LOC107587182 coding downstream 271974 18388927 ~ 18396708 (+)
G107547 NA non-coding upstream 15247 17816132 ~ 17816825 (+)
G107477 NA non-coding upstream 265196 17566193 ~ 17566876 (+)
G107468 NA non-coding upstream 352024 17479848 ~ 17480048 (+)
G107450 LOC108433790 non-coding upstream 374386 17454294 ~ 17457686 (+)
G107447 NA non-coding upstream 517411 17309345 ~ 17314661 (+)
LOC122358786 NA non-coding downstream 325742 18442695 ~ 18443413 (+)
G107688 NA non-coding downstream 408652 18525605 ~ 18526233 (+)
G107689 NA non-coding downstream 416596 18533549 ~ 18534339 (+)
G107693 NA non-coding downstream 442527 18559480 ~ 18559755 (+)
G107713 pds5b,LOC107587120,LOC107582244,LOC107683122,LOC107730842,LOC107752691,LOC107704775 non-coding downstream 553377 18670330 ~ 18675897 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other upstream 20869 17789845 ~ 17811203 (+)
lyrm9 lyrm9,LOC107756492 other upstream 1317851 16513308 ~ 16514221 (+)
G107148 nrip1a,LOC107587564,LOC107714172,LOC107666194,LOC107682571,LOC107756533,LOC107589737 other upstream 1595731 16089757 ~ 16236341 (+)
gdpd5b gdpd5,gdpd5b,LOC107714175,LOC107666190,LOC107682503,LOC107756554 other upstream 1788807 16004869 ~ 16043265 (+)
G107107 NA other upstream 1948562 15881114 ~ 15883510 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other downstream 639390 18756343 ~ 18758836 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other downstream 642629 18759582 ~ 18760497 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other downstream 677127 18794080 ~ 18795982 (+)
G107777 NA other downstream 725323 18842276 ~ 18843855 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other downstream 876392 18993345 ~ 18995991 (+)

Expression


Co-expression Network