si:dkey-30e9.6 (LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865)


Basic Information

Item Value
gene id si:dkey-30e9.6
gene name LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 18794080 ~ 18795982 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU159161
GCTCCATGCTGagctggctttttttttttttaatcaaacacaacaATTTGAACTCTTTACTGTCTACTTTGTCATGACCTGAATGACAGCCACTCCGTTAAGAAGGAAGAAAGCTGCTCTTCTCTGTGAGTCAGAACCTGATCTCGAGCAGGAGTTGCGGACCCATCCCACCACACCCAGTAGTTCCTGTTGATCCATGGAACATAAAAGCCCCCGACTTCACCCCAAAACTGTACAGATCTCCAGGTTTGCCGCGGATCAAGAGCAAAAGCATTCACCTGGTGAAATCAAACAGCAGTGTGGAAggaaaatcttttattttagaaaagatTAATGGCGTTACTCCTTCAACACTGCCTGGGCTTGAGCAAAAGGGAAGCAAAGCACGACCATTTATCACATTCTACAAACCACCAGACTCACTAGCGTCAAAAGTGCTGTTTGTGAGAGCAGGGATGTATCCGGTGGGGCTGTACAGAGATCCAAAACCTCATAACTTCAGACCTTGTGCTGTGGGAATGCCGGAAATTGTGACTTCTTTAGAAAAGGATCCTAGCTGCTTGATCCTAAAGTCTCAGCGCCTAAAAGCAGTCAGTGACAGCCATCCTGACTTGAGCCCTTCTCAGAGAGACACGGTGAACAAAATAGACACTTTCAAACCAGCAGAGCTTAAATGGGACCCAAGGCTCATACTACCAAAGACGCCATGGCCTCCAAAATCTGCGTCTTACACAAGACATCGCCGCAGGAGAGGAGTATATAGTGCCTTAATGGACCGAGTTGAAGAAAAGCTGACCAACTCCTGGAGGAAATGAATCTGttttaacacaaaagaaagaCTTCTGTGTTGTGCTGTGCAGATAAAGCTAGCTGAATCAATTTTCTGATTTGTCTAGTGAGTCCTGCTTTTTTATAGAGAACCCCACATTATTGTAaacatcattattatatatttttttcttttaatgttttagcttgctttttttttttt
>XM_043259952.1
ATTTGAACTCTTTACTGTCTACTTTGTCATGACCTGAATGACAGCCACTCCGTTAAGAAGGAATATTGCTCTGGGCATAAAGATGTGGCTGATTCACAATGAATCTTCCTGAGCCTTTGGAAACTCCCATGTCTGTTGACCTCAGAAGAAAGCTGCTCTTCTCTGTGAGTCAGAACCTGATCTCGAGCAGGAGTTGCGGACCCATCCCACCACACCCAGTAGTTCCTGTTGATCCATGGAACATAAAAGCCCCCGACTTCACCCCAAAACTGTACAGATCTCCAGGTTTGCCGCGGATCAAGAGCAAAAGCATTCACCTGGTGAAATCAAACAGCAGTGTGGAAggaaaatcttttattttagaaaagatTAATGGCGTTACTCCTTCAACACTGCCTGGGCTTGAGCAAAAGGGAAGCAAAGCACGACCATTTATCACATTCTACAAACCACCAGACTCACTAGCGTCAAAAGTGCTGTTTGTGAGAGCAGGGATGTATCCGGTGGGGCTGTACAGAGATCCAAAACCTCATAACTTCAGACCTTGTGCTGTGGGAATGCCGGAAATTGTGACTTCTTTAGAAAAGGATCCTAGCTGCTTGATCCTAAAGTCTCAGCGCCTAAAAGCAGTCAGTGACAGCCATCCTGACTTGAGCCCTTCTCAGAGAGACACGGTGAACAAAATAGACACTTTCAAACCAGCAGAGCTTAAATGGGACCCAAGGCTCATACTACCAAAGACGCCATGGCCTCCAAAATCTGCGTCTTACACAAGACATCGCCGCAGGAGAGGAGTATATAGTGCCTTAATGGACCGAGTTGAAGAAAAGCTGACCAACTCCTGGAGGAAATGAATCTGttttaacacaaaagaaagaCTTCTGTGTTGTGCTGTGCAGATAAAGCTAGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605205

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159161 True 991 TUCP 0.43 5 18794080 18795982
XM_043259952.1 False 910 mRNA 0.46 5 18794125 18795862

Neighbor

gene id symbol gene type direction distance location
vwde vwde,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 19430 18772258 ~ 18774650 (+)
tmem106ba tmem106b,LOC107704771,LOC107587075,LOC107752274,LOC107582242,LOC107730846,LOC107683194 coding upstream 23686 18766852 ~ 18770394 (+)
LOC122358576 NA coding upstream 59842 18727691 ~ 18734238 (+)
LOC122358577 NA coding upstream 66524 18724523 ~ 18727556 (+)
tekt1 tekt1,LOC107752352,LOC107704722,LOC107730869,LOC107587856,LOC107577743 coding upstream 69719 18721289 ~ 18724361 (+)
arl4aa arl4aa,LOC107704720,LOC107752852,LOC107588218,LOC107582295 coding downstream 1457 18797439 ~ 18798324 (+)
tspan13a tspan13a,LOC107704717,LOC107752827,LOC107582238,LOC107683454,LOC107730871,LOC107579983 coding downstream 206691 19002673 ~ 19005341 (+)
lta NA coding downstream 239993 19035975 ~ 19040881 (+)
tnfb NA coding downstream 250501 19046483 ~ 19048861 (+)
ppt2a.2 LOC107730851,LOC107683375,LOC107582233,LOC107752135,LOC107704757,LOC107586894 coding downstream 337043 19133025 ~ 19137062 (+)
G107752 NA non-coding upstream 47059 18744606 ~ 18747021 (+)
G107713 pds5b,LOC107587120,LOC107582244,LOC107683122,LOC107730842,LOC107752691,LOC107704775 non-coding upstream 118183 18670330 ~ 18675897 (+)
G107693 NA non-coding upstream 234325 18559480 ~ 18559755 (+)
G107689 NA non-coding upstream 259741 18533549 ~ 18534339 (+)
G107688 NA non-coding upstream 267847 18525605 ~ 18526233 (+)
LOC122358548 NA non-coding downstream 12276 18808258 ~ 18835601 (+)
G107774 etv1 non-coding downstream 16540 18812522 ~ 18838720 (+)
G107870 NA non-coding downstream 149291 18945273 ~ 18945552 (+)
G107871 NA non-coding downstream 150555 18946537 ~ 18946881 (+)
G107872 NA non-coding downstream 151065 18947047 ~ 18947385 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 33583 18759582 ~ 18760497 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other upstream 35244 18756343 ~ 18758836 (+)
G107558 si:dkey-285b23.4,si:dkey-285b23.3,LOC107748074,LOC107559010,LOC107575068,LOC107575069 other upstream 677127 17832072 ~ 18116953 (+)
G107574 frem2b,LOC107730863,LOC107587905,LOC107704782,LOC108433801,LOC106520551 other upstream 747176 18045017 ~ 18046904 (+)
trim3a trim3a,LOC107587229,LOC107704783,LOC108433799,LOC108278293,LOC103363426 other upstream 982877 17789845 ~ 17811203 (+)
G107777 NA other downstream 46294 18842276 ~ 18843855 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other downstream 197363 18993345 ~ 18995991 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other downstream 925302 19721284 ~ 19774385 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 1388138 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 1393051 20189033 ~ 20254271 (+)

Expression


Co-expression Network