G107999 (mrpl44)


Basic Information

Item Value
gene id G107999
gene name mrpl44
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 19216881 ~ 19218097 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU159507
aaatatatcaataaggGTTATATAAACAGCAGCGTGACATTacacaatgctttataaatcaTGCAGCTTATCAACTCTTGTGTCATACCTGTAAAGCCCGACGAAATAGAGAGGAAGGACAGTACTGGCGCCGGCAGACCGGATGAGACGGGGCTCAGGTAGAGCTGTACCTTTACGGGTCAGTTCTTTAACCAGCAGCCCCATGGGATCAACCACTTTCCACAAGTCAAACAGATCTTTCCCTATCAGCTGGGTCACCAGGAAATCCTGCAAAATCGCACAGATGGATCAACGAGTGCACAAAGATTAGGGCCCACTGCTCTGCTCCAGAGCACCAATCACAGCGAAGAACGTTCCTTGCAGGGTTTCATCGGGAACAGGAAACTCTGCACTCATCGTCAAATCCTCCACTGCAAGGTTCCGTGCGACGTGAcacatgacctctgaccctgtCAGGTGGCCTACGATGTCAGCCACACCTTCGTCAGGCAAGTTGGGAAAGCTTCCCCTGCACCAGTCACTGAGGAAACCCTGGACAAAACAAGAGGAGAGGGTGTGAATATCTGTATATAGTAAATTATTTGTATAGTAGAGTATAAGAGTTTCCACCTTTGTAAACCTTTGTCCGCGCACGCACAGCTCGCTATTGTCTTGCAGGTTAAGGGCGGTCGTCTCCAAATCAAGGCCCAGTGCTCGcctcctctcctcctcagaCCGCAGGTAACACGCGTTCACAAACGCCGTCTTCAGAAGCTCCAGAGAGAAACTCTCCTGCAGTCGGGCACCGAAGGCCTCCACTTCAGCGTGATAATCAAAGTTTGGCTGCCGG

Function

symbol description
mrpl44 Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Predicted to be involved in RNA processing and regulation of gene expression. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 16. Orthologous to human MRPL44 (mitochondrial ribosomal protein L44).

NR:

description
Zgc:114114

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159507 True 829 lncRNA 0.50 2 19216881 19218097

Neighbor

gene id symbol gene type direction distance location
slc19a3a slc19a3a,LOC107704692,LOC107587814,LOC107752583,LOC107683425 coding upstream 24390 19186942 ~ 19192491 (+)
sesn3 sesn3,LOC107752092,LOC107704751,LOC107730838,LOC107582231,LOC107683379 coding upstream 33075 19170524 ~ 19183806 (+)
ccdc105 ccdc105,LOC107752130,LOC107588197,LOC107730874,LOC107582268 coding upstream 64983 19146993 ~ 19151898 (+)
si:ch73-95l15.5 si:ch73-95l15.5,LOC107752121,LOC107704750,LOC107683319,LOC107730848,LOC107586839,LOC107586854 coding upstream 70456 19138126 ~ 19146425 (+)
ppt2a.2 LOC107730851,LOC107683375,LOC107582233,LOC107752135,LOC107704757,LOC107586894 coding upstream 79819 19133025 ~ 19137062 (+)
megf6 zgc:158328,LOC107752003,LOC107704746,LOC107587807 coding downstream 12541 19230638 ~ 19270908 (+)
trnav-aac_27 NA coding downstream 207020 19425117 ~ 19425189 (+)
nyap2a nyap2,nyap2a,LOC107704744,LOC107730860,LOC107683386,LOC107751997 coding downstream 215957 19434054 ~ 19469421 (+)
rhbdd1 rhbdd1,LOC107683388,LOC107582224 coding downstream 292249 19510346 ~ 19514482 (+)
col4a3 LOC107586745,LOC107704742,LOC107739767,LOC107683429 coding downstream 332603 19550700 ~ 19578860 (+)
G107866 NA non-coding upstream 258106 18956820 ~ 18958775 (+)
G107874 NA non-coding upstream 268266 18948395 ~ 18948615 (+)
G107873 NA non-coding upstream 268823 18947718 ~ 18948058 (+)
G107872 NA non-coding upstream 269496 18947047 ~ 18947385 (+)
G107871 NA non-coding upstream 270000 18946537 ~ 18946881 (+)
G108011 LOC107752015,LOC107683384,LOC107582227,LOC107586802 non-coding downstream 4643 19222740 ~ 19227382 (+)
G108055 NA non-coding downstream 270129 19488226 ~ 19535847 (+)
G108058 LOC107704741,LOC107586757,LOC107683428,LOC107730819 non-coding downstream 296884 19514981 ~ 19517474 (+)
G108124 NA non-coding downstream 471066 19689163 ~ 19689951 (+)
G108154 LOC107694807,LOC107755381,LOC107582218,LOC107739770,LOC107704708,LOC107585797 non-coding downstream 512642 19730739 ~ 19735234 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 220890 18993345 ~ 18995991 (+)
G107777 NA other upstream 373026 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 420899 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 456384 18759582 ~ 18760497 (+)
G107756 LOC107752648,LOC107704772,LOC107587109,LOC107582275,LOC107683161 other upstream 458045 18756343 ~ 18758836 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other downstream 503187 19721284 ~ 19774385 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 966023 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 970936 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 990073 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 1993713 21211810 ~ 21214493 (+)

Expression


Co-expression Network