G108217


Basic Information

Item Value
gene id G108217
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20014813 ~ 20016629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU159846
AATTCCTTCCAAGTCCCTCGCCACTTGTTGGAATTCTGCACTGGCAGGGTCCTCATACACGGGGTTGTACTCTGGTTTGAGAAGCTTAATTTGTCCGCTGTAAACCAGTGTGGATGAGCTATGTCTATATACGGTGGCCTCATTTTCCAATTCTTTGCTCCTGActttaccAACAAAGAGCCACACAAGAAATCCGACCACTGCAGCCACTACCAACAGGGCAACGACGACCCCCACGACAACTTTCGTCTTCCGTGCCGTTGCCATCTTCTGTTCATTCGTCAGGAAGGTGACCTGCTCGTGACGCCCATTCCCTCCCTGAAACAGAAATGCAAGTATTCTGTGGCGGTCTGTTGAAAGTACTGTAAACATTTAGTTCCTTTGAtaagcaaatgttttaatatagcATCTTCAGAATGAATCATGAATTCAGATggtttaaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159846 True 445 lncRNA 0.45 2 20014813 20016629

Neighbor

gene id symbol gene type direction distance location
kirrel3l kirrel3l,LOC107704734,LOC107739776,LOC107585713,LOC107755386,LOC107582216,LOC107694809 coding upstream 17650 19955988 ~ 19997163 (+)
gmnc gmnc,LOC107704691,LOC107683460,LOC107739787,LOC107721147,LOC107587788 coding upstream 365107 19645509 ~ 19649706 (+)
masp1 LOC107586740,LOC107704738,LOC107739768,LOC107721148,LOC107683390,LOC107582221 coding upstream 397211 19607164 ~ 19617602 (+)
sst1.1 LOC107586749,LOC107582287,LOC106579799,LOC107704709,LOC107683458,LOC107721142 coding upstream 418510 19595005 ~ 19596303 (+)
sst1.2 sst1.2,LOC107739785,LOC107704710,LOC107683457,LOC107721144,LOC107582289 coding upstream 432798 19580539 ~ 19582015 (+)
aplp1 LOC107755388,LOC107683668,LOC107704731 coding downstream 10742 20027371 ~ 20074259 (+)
LOC122359578 NA coding downstream 58023 20074652 ~ 20086581 (+)
LOC122358428 LOC107683669,LOC107709782,LOC107701556,LOC107709781,LOC107739789,LOC107704729,LOC107585717,LOC107585716 coding downstream 76685 20093314 ~ 20095157 (+)
LOC122358430 LOC107683669,LOC107701556,LOC107709782,LOC107585716,LOC107704729,LOC107739789,LOC107585718,LOC107585717,LOC107709781 coding downstream 84091 20100720 ~ 20102104 (+)
LOC122358429 LOC107704729,LOC107585716,LOC107585718,LOC107739789,LOC107585717,LOC107701556,LOC107683669 coding downstream 87901 20104530 ~ 20106568 (+)
G108207 NA non-coding upstream 100370 19914149 ~ 19914443 (+)
G108155 LOC107755381,LOC107582218,LOC107585797,LOC107694807,LOC107694804,LOC107739770,LOC107704708 non-coding upstream 278918 19731418 ~ 19735895 (+)
G108154 LOC107694807,LOC107755381,LOC107582218,LOC107739770,LOC107704708,LOC107585797 non-coding upstream 279579 19730739 ~ 19735234 (+)
G108124 NA non-coding upstream 324862 19689163 ~ 19689951 (+)
G108058 LOC107704741,LOC107586757,LOC107683428,LOC107730819 non-coding upstream 497339 19514981 ~ 19517474 (+)
G108231 LOC107571392,LOC107701561,LOC107740055 non-coding downstream 125176 20141805 ~ 20142372 (+)
G108240 NA non-coding downstream 154140 20170769 ~ 20233185 (+)
G108257 NA non-coding downstream 222738 20239367 ~ 20294956 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding downstream 280759 20297388 ~ 20302209 (+)
G108337 NA non-coding downstream 304252 20320881 ~ 20321946 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 240428 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1018822 18993345 ~ 18995991 (+)
G107777 NA other upstream 1170958 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 1218831 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 1254316 18759582 ~ 18760497 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 167491 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 172404 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 191541 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 1195181 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1707775 21724404 ~ 21726266 (+)

Expression


Co-expression Network