G108231 (LOC107571392,LOC107701561,LOC107740055)



Basic Information


Item Value
gene id G108231
gene name LOC107571392,LOC107701561,LOC107740055
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20141805 ~ 20142372 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU159874
ttccaaaaaaaaaaaccgttaCCACAGAAACACGAAATGCGAGGGAGGAAGGGAAAACACCTTTCAGGAGCCGTCGCtcactttcaaaaaaataaatggttcaGTTAActgattacaattttttttagatttttggtaaaagcctaattaaaaaaatgaatgggaaCAACACTTCCGGAACCCGAACCGCCGAGAAAAGGGGGCGTCTTTTCTAGCACTCACAACAACTTAAAGATATTCGGATTCGTTGACTTCTGACACTCGCTCCTCCTGGATATTGTGAATAGTGAATGTACGTGCTCCTGGTGGCTTCGCCTTGTCGTCTTCTTGGTCGTCCCCACCCAGTTTCCAGGTAACACGGTCTTTCACGGTTTCCTGGAGTTCCAGTCTCGCTTGGGTCTGTAGGTGATGCTGCTCTTGGGCGCTGAAGGGCGGAAGAGGCACCCGGTACGTGCTGTGGAAACGTCTCAGGTCGACTCGAAACGCCCCTTTCTCCAGTGTCATGCACGGCTCGAAACGGGCTCCCCATTCGATCTCCGTCTCGATGTACGAGGTCTTTGCTTGGCAC

Function


NR:

description
PREDICTED: G protein-activated inward rectifier potassium channel 3-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU159874 True 568 lncRNA 0.49 1 20141805 20142372

Neighbor


gene id symbol gene type direction distance location
zbtb32 zbtb32,LOC107745206,LOC107585720,LOC107701562,LOC107740056,LOC107683047 coding upstream 679 20126733 ~ 20141126 (+)
LOC122358429 LOC107704729,LOC107585716,LOC107585718,LOC107739789,LOC107585717,LOC107701556,LOC107683669 coding upstream 35237 20104530 ~ 20106568 (+)
LOC122358430 LOC107683669,LOC107701556,LOC107709782,LOC107585716,LOC107704729,LOC107739789,LOC107585718,LOC107585717,LOC107709781 coding upstream 39701 20100720 ~ 20102104 (+)
LOC122358428 LOC107683669,LOC107709782,LOC107701556,LOC107709781,LOC107739789,LOC107704729,LOC107585717,LOC107585716 coding upstream 46648 20093314 ~ 20095157 (+)
LOC122359578 NA coding upstream 55224 20074652 ~ 20086581 (+)
igflr1 LOC107585721 coding downstream 3816 20146188 ~ 20149817 (+)
psenen psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 coding downstream 41695 20184067 ~ 20186861 (+)
hspb6 hspb6,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding downstream 46542 20188914 ~ 20190769 (+)
lin37 lin37,LOC107745239,LOC107585799,LOC107675874,LOC107701558,LOC107747665 coding downstream 55868 20198240 ~ 20204220 (+)
LOC122358796 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 coding downstream 104806 20247178 ~ 20249733 (+)
G108211 NA non-coding upstream 85911 19998614 ~ 20055894 (+)
G108217 NA non-coding upstream 125176 20014813 ~ 20016629 (+)
G108207 NA non-coding upstream 227362 19914149 ~ 19914443 (+)
G108155 LOC107755381,LOC107582218,LOC107585797,LOC107694807,LOC107694804,LOC107739770,LOC107704708 non-coding upstream 405910 19731418 ~ 19735895 (+)
G108154 LOC107694807,LOC107755381,LOC107582218,LOC107739770,LOC107704708,LOC107585797 non-coding upstream 406571 19730739 ~ 19735234 (+)
G108240 NA non-coding downstream 28397 20170769 ~ 20233185 (+)
G108257 NA non-coding downstream 96995 20239367 ~ 20294956 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding downstream 155016 20297388 ~ 20302209 (+)
G108337 NA non-coding downstream 178509 20320881 ~ 20321946 (+)
LOC122359467 NA non-coding downstream 209225 20351597 ~ 20352384 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 367420 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1145814 18993345 ~ 18995991 (+)
G107777 NA other upstream 1297950 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 1345823 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 1381308 18759582 ~ 18760497 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other downstream 41748 20184120 ~ 20249972 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other downstream 46661 20189033 ~ 20254271 (+)
LOC122359185 LOC107742015,LOC107699248 other downstream 65798 20208170 ~ 20215479 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 1069438 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1582032 21724404 ~ 21726266 (+)

Expression



Co-expression Network