G108245 (psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557)


Basic Information

Item Value
gene id G108245
gene name psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20184120 ~ 20249972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU159893
ACGCCATAGTTTTCATCAGGAAGCGGAACCATAAAAGTTGTTTCCCCCTCGCCTTTGTTGTGTTAAACCCTCCGTTTTCTCGTCTGAGCTCGGCTTTTAAGGAAACATTATGAACCTTGAACGGATTCCAAACGAGGAGAAGCTTAGCCTCTGCAGAAGATACTACTTGGGTGGCTTCGCTTTTCTCCCCTTCCTCTGGTTGGTGAACGTTCTGTGGTTTTTCAGAGAAGCGTTTTTAAAGCCCTCGTACACGGAGCAATCCCAAATAAAATCATATGTAAAGAGGTCTGCTCTGGGGCTCATAGTGTGGGTGGCTGTGCTGACGACGTGGATCACCATATTCCAGCATTTCAGAGCACAGTGGGGTGAGGTGGGAGACTACCTCTCCTTCACCATTCCCCTCGGCACAGCCTGATCACATCCCATGCGTTACCGTACCCGTTTCCATTTTGGCTATTTTTTCTCCTCCCATCGACAAGATGTTCCTCGGCTAATTTTACCACTGTCGTCGCATAGTCTGGATCTGTCTGGGAGTTGTGGTATTTTGTGGACCGATGAAATCGTTTTGTTGATCGAGTGACATAATATGGACACGAATGCACCATGCTAAAGCGCAGGAGTTTATTTCCAGCACTACTACTGCTTCTTATTTCCTGttccttttttctttagttttagcTGAGATGTTTGTTGTATTTGAGATCGCGCATTCACATTAACTCTGACCTCTGTCGATGCATTGAAAAGAATGTATGACAAAAAATGATCTCCAGACCAGACAGGTCCATccaaaattttgtttttttggctgtGGATATGACGTGTAATATAATTGTTCTAAAAAAGGCTGATTTTCCTGCTATATATTAATCGTTTGGATGGACAGTAACATCACATATTTTGTCAGTACatataaaattgttttgcacaattttaaataaaattggaaAATATTCTGCA
>TU159894
CCCATCATGCACCACAATGGAGTGACGTCACGCCATAGTTTTCATCAGGAAGCGGAACCATAAAAGTTGTTTCCCCCTCGCCTTTGTTGTGTTAAACCCTCCGTTTTCTCGTCTGAGCTCGGCTTTTAAGGAAACATTATGAACCTTGAACGGATTCCAAACGAGGAGAAGCTTAGCCTCTGCAGAAGATACTACTTGGGTGGCTTCGCTTTTCTCCCCTTCCTCTGGTTGGTGAACGTTCTGTGGTTTTTCAGAGAAGCGTTTTTAAAGCCCTCGTACACGGAGCAATCCCAAATAAAATCATATGTAAAGAGGTCTGCTCTGGGGCTCATAGTGTGGGTGGCTGTGCTGACGACGTGGATCACCATATTCCAGCATTTCAGAGCACAGTGGGGTGAGGTGGGAGACTACCTCTCCTTCACCATTCCCCTCGGCACAGCCTGATCACATCCCATGCGTTACCGTACCCGTTTCCATTTTGGCTATTTTTTCTCCTCCCATCGACAAGATGTTCCTCGGCTAATTTTACCACTGTCGTCGCATAGTCTGGATCTGTCTGGGAGTTGTGGTATTTTGTGGACCGATGAAATCGTTTTGTTGATCGAGTGACATAATATGGACACGAATGCACCATGCTAAAGCGCAGGAGTTTATTTCCAGCACTACTACTGCTTCTTATTTCCTGttccttttttctttagttttagcTGAGATGTTTGTTGTATTTGAGATCGCGCATTCACATTAACTCTGACCTCTGTCGATGCATTGAAAAGAATGTATGACAAAAATGATCTCCAGACCAGACAGGTCCATccaaaattttgtttttttggctgtGGATATGACGTGTAATATAATTGTTCTAAAAAAGGCTGATTTTCCTGCTATATATTAATCGTTTGGATGGACAGTAACATCACATATTTTGTCAGTACatataaaattgttttgcacaattttaaataaaattggaaAATATTCTGCAGTGCCGTTGCTTTTGTCGTGATTGTGGAATATGAAAA
>TU159895
ACGCCATAGTTTTCATCAGGAAGCGGAACCATAAAAGTTGTTTCCCCCTCGCCTTTGTTGTGTTAAACCCTCCGTTTTCTCGTCTGAGCTCGGCTTTTAAGGAAACATTATGAACCTTGAACGGATTCCAAACGAGGAGAAGCTTAGCCTCTGCAGAAGATACTACTTGGGTGGCTTCGCTTTTCTCCCCTTCCTCTGGTTGGTGAACGTTCTGTGGTTTTTCAGAGAAGCGTTTTTAAAGCCCTCGTACACGGAGCAATCCCAAATAAAATCATATGTAAAGAGGTCTGCTCTGGGGCTCATAGTGTGGGTGGCTGTGCTGACGACGTGGATCACCATATTCCAGCATTTCAGAGCACAGTGGGGTGAGGTGGGAGACTACCTCTCCTTCACCATTCCCCTCGGCACAGCCTGATCACATCCCATGCGTTACCGTACCCGTTTCCATTTTGGCTATTTTTTCTCCTCCCATCGACAAGATGTTCCTCGGCTAATTTTACCACTGTCGTCGCATAGTCTGGATCTGTCTGGGAGTTGTGGTATTTTGTGGACCGATGAAATCGTTTTGTTGATCGAGTGACATAATATGGACACGAATGCACCATGCTAAAGCGCAGGAGTTTATTTCCAGCACTACTACTGCTTCTTATTTCCTGttccttttttctttagttttagcTGAGATGTTTGTTGTATTTGAGATCGCGCATTCACATTAACTCTGACCTCTGTCGATGCATTGAAAAGAATGTATGACAAAAAATGATCTCCAGACCAGACAGGTCCATccaaaattttgtttttttggctgtGGATATGACGTGTAATATAATTGTTCTAAAAAAGGCTGATTTTCCTGCTATATATTAATCGTTTGGATGGACAGTAACATCACATATTTTGTCAGTACatataaaattgttttgcacaattttaaataaaattggaaAATATTCTGCAGTGCCGTTGCTTTTGTCGTGATTGTGGAATATGAAAA

Function

symbol description
psenen Acts upstream of or within developmental pigmentation; melanocyte migration; and negative regulation of neuron apoptotic process. Predicted to be integral component of membrane. Predicted to be part of gamma-secretase complex. Is expressed in forebrain; hindbrain; midbrain; presumptive neural retina; and trunk. Human ortholog(s) of this gene implicated in hidradenitis suppurativa. Orthologous to human PSENEN (presenilin enhancer, gamma-secretase subunit).

NR:

description
PREDICTED: gamma-secretase subunit PEN-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159893 False 960 TUCP 0.42 4 20184120 20186861
TU159894 True 1025 TUCP 0.43 4 20247202 20249972
TU159895 False 997 TUCP 0.42 5 20184120 20249972

Neighbor

gene id symbol gene type direction distance location
igflr1 LOC107585721 coding upstream 34303 20146188 ~ 20149817 (+)
zbtb32 zbtb32,LOC107745206,LOC107585720,LOC107701562,LOC107740056,LOC107683047 coding upstream 42994 20126733 ~ 20141126 (+)
LOC122358429 LOC107704729,LOC107585716,LOC107585718,LOC107739789,LOC107585717,LOC107701556,LOC107683669 coding upstream 77552 20104530 ~ 20106568 (+)
LOC122358430 LOC107683669,LOC107701556,LOC107709782,LOC107585716,LOC107704729,LOC107739789,LOC107585718,LOC107585717,LOC107709781 coding upstream 82016 20100720 ~ 20102104 (+)
LOC122358428 LOC107683669,LOC107709782,LOC107701556,LOC107709781,LOC107739789,LOC107704729,LOC107585717,LOC107585716 coding upstream 88963 20093314 ~ 20095157 (+)
LOC122358795 hspb6,LOC107571389,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding downstream 2020 20251992 ~ 20253736 (+)
LOC122358794 lin37,LOC107745239,LOC107675874,LOC107747665,LOC107585799,LOC107701558 coding downstream 11755 20261727 ~ 20267188 (+)
LOC122359506 NA coding downstream 67574 20317546 ~ 20334995 (+)
LOC122358440 NA coding downstream 87574 20337546 ~ 20346308 (+)
LOC122358498 LOC107735540 coding downstream 103857 20353829 ~ 20356625 (+)
G108231 LOC107571392,LOC107701561,LOC107740055 non-coding upstream 41748 20141805 ~ 20142372 (+)
G108211 NA non-coding upstream 128226 19998614 ~ 20055894 (+)
G108217 NA non-coding upstream 167491 20014813 ~ 20016629 (+)
G108207 NA non-coding upstream 269677 19914149 ~ 19914443 (+)
G108155 LOC107755381,LOC107582218,LOC107585797,LOC107694807,LOC107694804,LOC107739770,LOC107704708 non-coding upstream 448225 19731418 ~ 19735895 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding downstream 47416 20297388 ~ 20302209 (+)
G108337 NA non-coding downstream 70909 20320881 ~ 20321946 (+)
LOC122359467 NA non-coding downstream 101625 20351597 ~ 20352384 (+)
LOC122359263 NA non-coding downstream 583522 20833494 ~ 20838578 (+)
G108394 NA non-coding downstream 598750 20848722 ~ 20849915 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 409735 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1188129 18993345 ~ 18995991 (+)
G107777 NA other upstream 1340265 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 1388138 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 1423623 18759582 ~ 18760497 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 961838 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1474432 21724404 ~ 21726266 (+)
G108571 NA other downstream 1482009 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 1485042 21735014 ~ 21735718 (+)
G108573 NA other downstream 1486708 21736680 ~ 21737687 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G510172 NA unknown CI01000352 null 146223 ~ 146609 (+)
bowfin (Amia calva) AMCG00015191 psenen coding CM030132.1 CM030132.1 4295433 ~ 4300203 (-)