LOC122359185 (LOC107742015,LOC107699248)


Basic Information

Item Value
gene id LOC122359185
gene name LOC107742015,LOC107699248
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20208170 ~ 20215479 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU159916
GGAGAGCAACGAAATGTGAGATCGAGTGTTAATGACCATGTGAGCTTTTGCTGTGTGCTTCGTGGAATCAGTCGGAgagAGCACATATAGGCCACTGCCGTTGTTTTGTACGCCGTTGTTTTGTACGCCGTTTTTCCGTTTTTGTAACCTTGTTTGCACCGGGTAAAATTGAAGGGCCTGTAATCCTGTGAAACCTATTCAGGAAAGTTAAGACCACTGACGTTAATTAGGTGGTTGtctctgtaaatttatttatttttattttctttactttgtctTACCCTGAATTAGACCTTAATGCTGAGTTTCCTTTTAAGCTCAGTCAAGAATAAAAGAACCCTTATTTGTTAGATGTCCTGgcggtgtttgtgtttttttatttagtacaagtTCACTTGCCCGGCcacatctaa
>TU159917
GGAGAGCAACGAAATGTGAGATCGAGTGTTAATGACCATGTGAGCTTTTGCTGTGTGCTTCGTGGAATCAGTCGGAgagAGCACATATAGGCCACTGCCGTTGTTTTGTACGCCGTTGTTTTGTACGCCGTTTTTCCGTTTTTGTAACCTTGTTTGCACCGGGTAAAATTGAAGGGCCTGTAATCCTGTGAAACCTATTCAGGAAAGTTAAGACCACTGACGTTAATTAGGTGGTTGtctctgtaaatttatttatttttattttctttactttgtctTACCCTGAATTAGACCTTAATGCTGAGTTTCCTTTTAAGCTCAGTCAAGAATAAAAGAACCCTTATTTGTTAGATGTCCTGgcggtgtttgtgttttttttatttagtacaagtTCACTTGCCCGGCCACATCTAATTTTGGTACCAGGAGTGgggttctgttttgtttggggctgatttagttttttgtaacaACAGTGCAAACAACGGTAGTGGCAAAAGGCGACTAAGTGCTGAAAGGACCTGCAGTTCCATCCTGGTAGAAGCGACAGCAGTACAAGGTGCCAGCGCATCAGGACTCCTGAGCTTGAGGACAGCGAGGAGGAGGACAGTGTTGAACTGATTGTTTGAGAACTAAAACTGCCGGAgcagtcaagtcaagtcatggATGCTGAGGACATCAGAGGTGCAGCTGCGATGGAGGACAACTTTCAGGGTGCAGGTGCTGAGGCACCAGAAATGGACATTGAAAGAGGTAGCCCTGTCTCACATCTTCAGTCCCAAATTTCGGAGCTGGGACGTAGGCATGATGAAGTAATGTCAGCTCTTGCTAACATGACTAATGTTCATACTAGGTCCTATGTGTATATCCCAAGAGAGAAACAAATTGTACCGTTCAGTGGGGACCCAGGTAAAGACTgccaaaatgtagatgagttcaTTGAGGAACTGGGGAGGGTTATACGAGTAAGGGGGTTAAATGTTGAAGATCAGGTAGATTTTATTCTCTCCCACTTGAAG
>XR_006252691.1
GGAGAGCAACGAAATGTGAGATCGAGTGTTAATGACCATGTGAGCTTTTGCTGTGTGCTTCGTGGAATCAGTCGGAgagAGCACATATAGGCCACTGCCGTTGTTTTGTACGCCGTTGTTTTGTACGCCGTTTTTCCGTTTTTGTAACCTTGTTTGCACCGGGTAAAATTGAAGGGCCTGTAATCCTGTGAAACCTATTCAGGAAAGTTAAGACCACTGACGTTAATTAGGTGGTTGtctctgtaaatttatttatttttattttctttactttgtctTACCCTGAATTAGACCTTAATGCTGAGTTTCCTTTTAAGCTCAGTCAAGAATAAAAGAACCCTTATTTGTTAGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107742015 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159916 False 413 lncRNA 0.40 3 20208170 20215479
TU159917 True 1019 TUCP 0.44 2 20208170 20209326
XR_006252691.1 False 352 lncRNA 0.39 2 20208170 20208659

Neighbor

gene id symbol gene type direction distance location
lin37 lin37,LOC107745239,LOC107585799,LOC107675874,LOC107701558,LOC107747665 coding upstream 3950 20198240 ~ 20204220 (+)
hspb6 hspb6,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding upstream 17401 20188914 ~ 20190769 (+)
psenen psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 coding upstream 21309 20184067 ~ 20186861 (+)
igflr1 LOC107585721 coding upstream 58353 20146188 ~ 20149817 (+)
zbtb32 zbtb32,LOC107745206,LOC107585720,LOC107701562,LOC107740056,LOC107683047 coding upstream 67044 20126733 ~ 20141126 (+)
LOC122358796 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 coding downstream 31699 20247178 ~ 20249733 (+)
LOC122358795 hspb6,LOC107571389,LOC107675875,LOC107745202,LOC107747664,LOC107701566 coding downstream 36513 20251992 ~ 20253736 (+)
LOC122358794 lin37,LOC107745239,LOC107675874,LOC107747665,LOC107585799,LOC107701558 coding downstream 46248 20261727 ~ 20267188 (+)
LOC122359506 NA coding downstream 102067 20317546 ~ 20334995 (+)
LOC122358440 NA coding downstream 122067 20337546 ~ 20346308 (+)
G108231 LOC107571392,LOC107701561,LOC107740055 non-coding upstream 65798 20141805 ~ 20142372 (+)
G108211 NA non-coding upstream 152276 19998614 ~ 20055894 (+)
G108217 NA non-coding upstream 191541 20014813 ~ 20016629 (+)
G108207 NA non-coding upstream 293727 19914149 ~ 19914443 (+)
G108155 LOC107755381,LOC107582218,LOC107585797,LOC107694807,LOC107694804,LOC107739770,LOC107704708 non-coding upstream 472275 19731418 ~ 19735895 (+)
G108257 NA non-coding downstream 23888 20239367 ~ 20294956 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding downstream 81909 20297388 ~ 20302209 (+)
G108337 NA non-coding downstream 105402 20320881 ~ 20321946 (+)
LOC122359467 NA non-coding downstream 136118 20351597 ~ 20352384 (+)
LOC122359263 NA non-coding downstream 618015 20833494 ~ 20838578 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 433785 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1212179 18993345 ~ 18995991 (+)
G107777 NA other upstream 1364315 18842276 ~ 18843855 (+)
si:dkey-30e9.6 LOC107683422,LOC107752859,LOC107588226,LOC107704721,LOC107582296,LOC107730865 other upstream 1412188 18794080 ~ 18795982 (+)
G107757 lsr,LOC107704772,LOC107587109,LOC107752648,LOC107683161,LOC107730812 other upstream 1447673 18759582 ~ 18760497 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 996331 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1508925 21724404 ~ 21726266 (+)
G108571 NA other downstream 1516502 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 1519535 21735014 ~ 21735718 (+)
G108573 NA other downstream 1521201 21736680 ~ 21737687 (+)

Expression


Co-expression Network