LOC122359263



Basic Information


Item Value
gene id LOC122359263
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20833494 ~ 20838578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU160196
ttgccaggttttcacagcaaaaccCGCCCAAATACTACACGAATCGCTATTTGGGGCGGGGGGGATTGGGTATTGTCTGGGTTTCTTGAAAGTATCCCAATTCTGCTGATTCATTTCCCACCTAAAAATGCGGCACTGAAGAGTTTACCGTATCTAAAGTCACCCCTGCGTTCGTGTCGTGAAGACACCGGGATGCCAACGTGAGCAAAACAACCTACGTCTTCTGAGGGGCATGTTTTCCTGAGGGCCATGAAGTGACAGACAACTGACTACAGTCCCCAGACCTAATTCAATATGGAAATAAGCAGGGAGTTGGATGTATTTGCCAAATGATCAAGTAAACTGGATTGTCCTGGAAGACTAAGACTAGACTCAGCACTTCCCAGACCTAATTAATTACAGAGGGTGGAGTTGGAGGATGGATGCCAGAGGAGCTGTCTAAGGAGTAAGAACCAGAACAAGCCAACCCGTCCCCTGTGTGGTGtcgtcctcctcttctcctcctcctttgGTCTTCTGTTCCTTCGCCCTGTATTTCCCTCCCTCTGATGGATCCGGCCGCCCCGGTGCGCCACCAGACCAAAAAGCGAAAAGGGCAAGAAATTTGTCACCTTCCCCAACAAGACCCTCACCAGACAAAAGAACAACGGCATTAATCATCTGACATTTCAATATTGTATTACCCTTTCTAGTGAAAATCAAGGGGGTCATTAAACTGGTAAAAGGAGACGGGGTGCAGATCAATAGAACAAGCCTCGAACAGAACCTTGAGCTTTACTGCCGTCTGCAGATTCACAGCTGCTGTCAGTAGGTATGATAGGAGACAGCCTTAACTAATTACCTCTACGTGAAGGGCATGAAGTGGCGTTCAATGCATTGATGGCAGCAGTGAAGAGAACACTTAATCAGCAGGCAATGAATATAAACAGGCAAAGACCACCGGAGGGGAGCCCCTTGTTTGTGGTGCTGTTCTTGATGAGAGCCGATGGTAGCGTGAGGTTTTGTGTctgtaaaaacaacacacaGCCGAATTGCGTAGAGTATGTTGAAATGCTTTAGACGAGGGGAGAGTTTGAGAATGTGCCCTCCGAGTGCTTTCATGTTCTGCTTTTAGTACGTGGCACAGGGAAAGTTTTTCTTCGAGGATGAATTAAAAGGAGCGACAGGCTAATAGGGAGAGATACCTCAGTCGTTTCTCTTCGCTTTCACGAGCCTCTCCTGGCCGTTCACCCGTGTCTTCGTCATTCATCATCCTGCAATCGCGGCGTGTCTgttcagcaggtcgtttaactACGAAAACATGCCAATTTAGCCTGTTTGTGTGTTCGCGGACAACTTCAAACGCTGTTTGGACATGGTCAGTCATCGTGCCGTTTCGGTTTGGTAGCTGTCAGAGTTCAGGTCTGTGATTGTGGAGCTCTTAACAAAACAA
>XR_006252695.1
gtaatgacAGTCATACGTCATTTCATGACGACAGACTCAACGCGAcgctgtcattatttttacgtTGGCTATAGGGCGCTTaacttaatggaaaaaaaaaggcagggggtcactttaaatgtaattcacgAAATCAGAGGTAgactagtaaaaaaatatttcaccgctgatcagggttgccaggttttcacagcaaaaccCGCCCAAATACTACACGAATCGCTATTTGGGGCGGGGGGGATTGGGTATTGTCTGGGTTTCTTGAAAGTATCCCAATTCTGCTGATTCATTTCCCACCTAAAAATGCGGCACTGAAGAGTTTACCGTATCTAAAGTCACCCCTGCGTTCGTGTCGTGAAGACACCGGGATGCCAACGTGAGCAAAACAACCTACGTCTTCTGAGGGGCATGTTTTCCTGAGGGCCATGAAGTGACAGACAACTGACTACAGTCCCCAGACCTAATTCAATATGGAAATAAGCAGGGAGTTGGATGTATTTGCCAAATGATCAAGTAAACTGGATTGTCCTGGAAGACTAAGACTAGACTCAGCACTTCCCAGACCTAATTAATTACAGAGGGTGGAGTTGGAGGATGGATGCCAGAGGAGCTGTCTAAGGAGTAAGAACCAGAACAAGCCAACCCGTCCCCTGTGTGGTGtcgtcctcctcttctcctcctcctttgGTCTTCTGTTCCTTCGCCCTGTATTTCCCTCCCTCTGATGGATCCGGCCGCCCCGGTGCGCCACCAGACCAAAAAGCGAAAAGGGCAAGAAATTTGTCACCTTCCCCAACAAGACCCTCACCAGACAAAAGAACAACGGCATTAATCATCTGACATTTCAATATTGTATTACCCTTTCTAGTGAAAATCAAGGGGGTCATTAAACTGGTAAAAGGAGACGGGGTGCAGATCAATAGAACAAGCCTCGAACAGAACCTTGAGCTTTACTGCCGTCTGCAGATTCACAGCTGCTGTCAGTAGGTATGATAGGAGACAGCCTTAACTAATTACCTCTACGTGAAGGGCATGAAGTGGCGTTCAATGCATTGATGGCAGCAGTGAAGAGAACACTTAATCAGCAGGCAATGAATATAAACAGGCAAAGACCACCGGAGGGGAGCCCCTTGTTTGTGGTGCTGTTCTTGATGAGAGCCGATGGTAGCGTGAGGTTTTGTGTctgtaaaaacaacacacaGCCGAATTGCGTAGAGTATGTTGAAATGCTTTAGACGAGGGGAGAGTTTGAGAATGTGCCCTCCGAGTGCTTTCATGTTCTGCTTTTAGTACGTGGCACAGGGAAAGTTTTTCTTCGAGGATGAATTAAAAGGAGCGACAGGCTAATAGGGAGAGATACCTCAGTCGTTTCTCTTCGCTTTCACGAGCCTCTCCTGGCCGTTCACCCGTGTCTTCGTCATTCATCATCCTGCAATCGCGGCGTGTCTgttcagcaggtcgtttaactACGAAAACATGCCAATTTAGCCTGTTTGTGTGTTCGCGGACAACTTCAAACGCTGTTTGGACATGGTCAGTCATCGTGCCGTTTCGGTTTGGTAGCTGTCAGAGTTCAGGTCTGTGATTGTGGAGCTCTTAACAAAACAAAGTGATTAAAGA
>XR_006252696.1
AGCGCGGGAGAGCGCCACGACTCTCTCATCAGTTTGACCCGCAAGACAGGAAGGGAAAGCTTCACGACCCTGTCTTGCGTGTCTGACGTCTTCTGAGGGGCATGTTTTCCTGAGGGCCATGAAGTGACAGACAACTGACTACAGTCCCCAGACCTAATTCAATATGGAAATAAGCAGGGAGTTGGATGTATTTGCCAAATGATCAAGTAAACTGGATTGTCCTGGAAGACTAAGACTAGACTCAGCACTTCCCAGACCTAATTAATTACAGAGGGTGGAGTTGGAGGATGGATGCCAGAGGAGCTGTCTAAGGAGTAAGAACCAGAACAAGCCAACCCGTCCCCTGTGTGGTGtcgtcctcctcttctcctcctcctttgGTCTTCTGTTCCTTCGCCCTGTATTTCCCTCCCTCTGATGGATCCGGCCGCCCCGGTGCGCCACCAGACCAAAAAGCGAAAAGGGCAAGAAATTTGTCACCTTCCCCAACAAGACCCTCACCAGACAAAAGAACAACGGCATTAATCATCTGACATTTCAATATTGTATTACCCTTTCTAGTGAAAATCAAGGGGGTCATTAAACTGGTAAAAGGAGACGGGGTGCAGATCAATAGAACAAGCCTCGAACAGAACCTTGAGCTTTACTGCCGTCTGCAGATTCACAGCTGCTGTCAGTAGGTATGATAGGAGACAGCCTTAACTAATTACCTCTACGTGAAGGGCATGAAGTGGCGTTCAATGCATTGATGGCAGCAGTGAAGAGAACACTTAATCAGCAGGCAATGAATATAAACAGGCAAAGACCACCGGAGGGGAGCCCCTTGTTTGTGGTGCTGTTCTTGATGAGAGCCGATGGTAGCGTGAGGTTTTGTGTctgtaaaaacaacacacaGCCGAATTGCGTAGAGTATGTTGAAATGCTTTAGACGAGGGGAGAGTTTGAGAATGTGCCCTCCGAGTGCTTTCATGTTCTGCTTTTAGTACGTGGCACAGGGAAAGTTTTTCTTCGAGGATGAATTAAAAGGAGCGACAGGCTAATAGGGAGAGATACCTCAGTCGTTTCTCTTCGCTTTCACGAGCCTCTCCTGGCCGTTCACCCGTGTCTTCGTCATTCATCATCCTGCAATCGCGGCGTGTCTgttcagcaggtcgtttaactACGAAAACATGCCAATTTAGCCTGTTTGTGTGTTCGCGGACAACTTCAAACGCTGTTTGGACATGGTCAGTCATCGTGCCGTTTCGGTTTGGTAGCTGTCAGAGTTCAGGTCTGTGATTGTGGAGCTCTTAACAAAACAAAGTGATTAAAGA

Function


GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0045137 development of primary sexual characteristics biological_process
GO:0007548 sex differentiation biological_process
GO:0061458 reproductive system development biological_process
GO:0048608 reproductive structure development biological_process
GO:0061134 peptidase regulator activity molecular_function
GO:0061135 endopeptidase regulator activity molecular_function
GO:0030414 peptidase inhibitor activity molecular_function
GO:0004866 endopeptidase inhibitor activity molecular_function
GO:0030234 enzyme regulator activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU160196 False 1432 lncRNA 0.48 5 20833670 20838566
XR_006252695.1 True 1620 lncRNA 0.47 5 20833494 20838578
XR_006252696.1 False 1313 lncRNA 0.48 5 20833895 20838578

Neighbor


gene id symbol gene type direction distance location
robo2 robo2,LOC107741616,LOC107745189 coding upstream 5579 20461144 ~ 20827915 (+)
LOC122358393 sel1l3,LOC107675880,LOC107585777,LOC559843,LOC107686521 coding upstream 385408 20439195 ~ 20448086 (+)
stim1a stim1a,stim1,LOC107745192,LOC107686510,LOC107570037,LOC107675872,LOC108432992,LOC108277929 coding upstream 394668 20405710 ~ 20438826 (+)
LOC122358498 LOC107735540 coding upstream 476869 20353829 ~ 20356625 (+)
LOC122358440 NA coding upstream 487186 20337546 ~ 20346308 (+)
cab39 cab39,LOC107698862,LOC107585731,LOC107559190,LOC107695174 coding downstream 354473 21193051 ~ 21201218 (+)
itm2ca itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866 coding downstream 364271 21202849 ~ 21210105 (+)
ngef ngef,LOC107585734,LOC107745214 coding downstream 387574 21226152 ~ 21251420 (+)
trnai-aau_69 NA coding downstream 414164 21252742 ~ 21252815 (+)
trnaw-cca_2 NA coding downstream 414899 21253477 ~ 21253548 (+)
LOC122359467 NA non-coding upstream 481110 20351597 ~ 20352384 (+)
G108337 NA non-coding upstream 511548 20320881 ~ 20321946 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding upstream 531285 20297388 ~ 20302209 (+)
G108257 NA non-coding upstream 538538 20239367 ~ 20294956 (+)
G108240 NA non-coding upstream 600309 20170769 ~ 20233185 (+)
G108394 NA non-coding downstream 10144 20848722 ~ 20849915 (+)
G108418 LOC107086176 non-coding downstream 233503 21072081 ~ 21190373 (+)
G108427 NA non-coding downstream 362809 21201387 ~ 21202509 (+)
G108553 NA non-coding downstream 778078 21616656 ~ 21617193 (+)
G108555 NA non-coding downstream 792751 21631329 ~ 21908852 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 579223 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 583522 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 618015 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 1059109 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1837503 18993345 ~ 18995991 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 373232 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 885826 21724404 ~ 21726266 (+)
G108571 NA other downstream 893403 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 896436 21735014 ~ 21735718 (+)
G108573 NA other downstream 898102 21736680 ~ 21737687 (+)

Expression



Co-expression Network