G108553


Basic Information

Item Value
gene id G108553
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21616656 ~ 21617193 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU160400
GGAGAAACGattggtttattaataataccTCTAGTCAGCGCGAACGTACATTCCTTACAGTGTGCAATATTTCTCTGGCGCCCTCCTGCAGTGTTTAATGCTGACGGCCCGTCATGCTATATGCTCCACCGGCTTGATGGAGTCCGAGCCATTCCATCTAGAACAGGGTGGAGTCACGGAAAGTCCATAGGGCCGCACCGAGGAAATATTTCCCATGCACACCATCACTCAAACGCACATGCATGCAATCCGCGCTACAGCTGCGCACCTCAGGCATGTGCCTGtggaatgaaaaacaaattgagCTATAAAATACCACCTCAACCCTTATAAGACAAGCTCTCCATCCCAGAGCAAGTTACGGCATTCAAAAAGACAGTGCCCTTTAACGGTGCATTCGATTGGTCCTTCGTTTGTGGGCGTGGTTTTCAGGGCGGTGAGGTAGTGGGTGTGGTCCAGTTCCCGTCGTCACGGAGACGGGCCTGTCCTTGGTCGTCTGGATAAATGATCTCCTCCAGCGTTACGTAGGTCCCGGTCA

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0022037 metencephalon development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160400 True 538 lncRNA 0.51 1 21616656 21617193

Neighbor

gene id symbol gene type direction distance location
mtnr1ba mtnr1ba,LOC107745177,LOC107585812,LOC107669925,LOC107705472,LOC108413652 coding upstream 33749 21567245 ~ 21582907 (+)
fat3a fat3,fat3a,LOC107564369,LOC107705473,LOC107585783,LOC107698854,LOC107745210 coding upstream 62116 21420083 ~ 21554540 (+)
gal3st2 LOC107698869,LOC107745180,LOC107585737,LOC107564367 coding upstream 320754 21285387 ~ 21295902 (+)
efhd1 efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379 coding upstream 353212 21255183 ~ 21263444 (+)
trnag-ucc_4 NA coding upstream 361651 21254934 ~ 21255005 (+)
LOC122358927 NA coding downstream 98008 21715201 ~ 21723980 (+)
LOC122358818 si:ch211-276c2.2,LOC107698872,LOC107585786,LOC107669856,LOC107739921,LOC108278112,LOC108440474 coding downstream 174413 21791606 ~ 21833216 (+)
clstn2b si:ch211-276c2.2,LOC107698872,LOC107669856,LOC107739921,LOC107585786 coding downstream 225470 21842663 ~ 22014307 (+)
pxylp1 pxylp1,LOC107669877,LOC107558839,LOC107722277,LOC107698201,LOC107585747 coding downstream 434397 22051590 ~ 22065594 (+)
sgpp2 sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257 coding downstream 549921 22167114 ~ 22174542 (+)
G108427 NA non-coding upstream 414147 21201387 ~ 21202509 (+)
G108418 LOC107086176 non-coding upstream 426283 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 766741 20848722 ~ 20849915 (+)
LOC122359263 NA non-coding upstream 778078 20833494 ~ 20838578 (+)
LOC122359467 NA non-coding upstream 1264272 20351597 ~ 20352384 (+)
G108555 NA non-coding downstream 14136 21631329 ~ 21908852 (+)
G108560 LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471 non-coding downstream 17008 21634201 ~ 21911355 (+)
G108561 NA non-coding downstream 25390 21642583 ~ 21920410 (+)
G108569 LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797 non-coding downstream 109867 21727060 ~ 21727570 (+)
G108648 NA non-coding downstream 408605 22025798 ~ 22026309 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 402163 21211810 ~ 21214493 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 1362385 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 1366684 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 1401177 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 1842271 19721284 ~ 19774385 (+)
LOC122358705 NA other downstream 107211 21724404 ~ 21726266 (+)
G108571 NA other downstream 114788 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 117821 21735014 ~ 21735718 (+)
G108573 NA other downstream 119487 21736680 ~ 21737687 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 1158456 22775649 ~ 22777725 (+)

Expression


Co-expression Network