G108560 (LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471)


Basic Information

Item Value
gene id G108560
gene name LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21634201 ~ 21911355 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU160408
ttGAGTATATATGTGAAGATGAGAACGAGGCTGACAGCCATACAGAGGTTGGCGACGGCGGAGAGGGCAGCCATGTTCCTCAGGTCTCTGATGAAGGTCAGGACGATGATGAAGGGAAGGAGGAAGACCATGTAGAGCCTCAGGTCCAGCCCCGAAGGCGTTGCGGGGGAGGCGGCGCCCTCCTCTGAGCTGTTGGAGTATAACAGCGGCGTCTCCGCCGAGCTGTTCACATGCGTTCCCTCCATCacctaacaaacacacacagccgtGACCTCGCTTTGACCGGCTCTGATTGGCAGCTGCTGGGCTTCCTTCTGGAAATGCGTCTGTCTATTCATTTTGACCGGCTCTGATTGGCAGCTGCTGGGCTTCCTTCTGGAAATGCGTCTGTCTATTCATTTTGACTGGCTCCAGCTCTGTCACGTAATCGAAATCTACGGACAAAAAGGAACTTCTCGAGCtccactctcacacacatacctgtttgatgttttcagccaggaacacaaaataaacactacaGAAGCCCAGCTGGGTCAAAACCAGGAAGAAATTCAC

Function

NR:

description
PREDICTED: proton-coupled amino acid transporter 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160408 True 558 lncRNA 0.53 2 21634201 21911355

Neighbor

gene id symbol gene type direction distance location
mtnr1ba mtnr1ba,LOC107745177,LOC107585812,LOC107669925,LOC107705472,LOC108413652 coding upstream 51294 21567245 ~ 21582907 (+)
fat3a fat3,fat3a,LOC107564369,LOC107705473,LOC107585783,LOC107698854,LOC107745210 coding upstream 79661 21420083 ~ 21554540 (+)
gal3st2 LOC107698869,LOC107745180,LOC107585737,LOC107564367 coding upstream 338299 21285387 ~ 21295902 (+)
efhd1 efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379 coding upstream 370757 21255183 ~ 21263444 (+)
trnag-ucc_4 NA coding upstream 379196 21254934 ~ 21255005 (+)
pxylp1 pxylp1,LOC107669877,LOC107558839,LOC107722277,LOC107698201,LOC107585747 coding downstream 140235 22051590 ~ 22065594 (+)
sgpp2 sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257 coding downstream 255759 22167114 ~ 22174542 (+)
scaf4b LOC107669875,LOC107722265,LOC107670118,LOC107585791,LOC107558831,LOC107705626 coding downstream 272193 22183548 ~ 22205101 (+)
tiam1b tiam1b,LOC107670130,LOC107705640,LOC107669892,LOC107558809,LOC107585792 coding downstream 308855 22220210 ~ 22274827 (+)
LOC122358842 NA coding downstream 366633 22277988 ~ 22279228 (+)
G108553 NA non-coding upstream 17008 21616656 ~ 21617193 (+)
G108427 NA non-coding upstream 431692 21201387 ~ 21202509 (+)
G108418 LOC107086176 non-coding upstream 443828 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 784286 20848722 ~ 20849915 (+)
LOC122359263 NA non-coding upstream 795623 20833494 ~ 20838578 (+)
G108648 NA non-coding downstream 114443 22025798 ~ 22026309 (+)
G108654 LOC107739918,LOC107722272,LOC107722276,LOC107558836,LOC107669876,LOC107585787,LOC107696356,LOC107565148 non-coding downstream 117082 22028437 ~ 22036838 (+)
G108713 NA non-coding downstream 266037 22177392 ~ 22178630 (+)
G108721 NA non-coding downstream 354477 22265832 ~ 22323620 (+)
G108723 NA non-coding downstream 429377 22340732 ~ 22355913 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 419708 21211810 ~ 21214493 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 1379930 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 1384229 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 1418722 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 1859816 19721284 ~ 19774385 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 864294 22775649 ~ 22777725 (+)
G108990 NA other downstream 1037785 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 1044356 22955711 ~ 22959679 (+)
G109132 NA other downstream 1335420 23246775 ~ 23271291 (+)
G109193 NA other downstream 1598077 23509432 ~ 23510315 (+)

Expression


Co-expression Network