G108569 (LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797)


Basic Information

Item Value
gene id G108569
gene name LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21727060 ~ 21727570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU160422
TTTAACACTAAGAGACATCTCGGCCATGAAGTCCTCaacacatttaaatcaaatctgaGGAAGAAGTTTGAGCGTCTGTATGAAGGAACAGCAAAGCAGGGAAGCCCAACACTCCTGAATgagatctacacagagctctacatcacagagagtgagagtggAGAGATCAGTAATGAACATGAGTTGAGACAGATTGAGACACAGTCCAGGAGAGCAGCAACAGAGGACACACCGATCAAATGCAGTGAGATCTTTAGATCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACAAAGggagtcgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggctGAAGGGAAAGAGAATCAGGACGTCCAGCTCATATTTCCAC

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160422 True 400 lncRNA 0.46 2 21727060 21727570

Neighbor

gene id symbol gene type direction distance location
LOC122358927 NA coding upstream 3080 21715201 ~ 21723980 (+)
mtnr1ba mtnr1ba,LOC107745177,LOC107585812,LOC107669925,LOC107705472,LOC108413652 coding upstream 144153 21567245 ~ 21582907 (+)
fat3a fat3,fat3a,LOC107564369,LOC107705473,LOC107585783,LOC107698854,LOC107745210 coding upstream 172520 21420083 ~ 21554540 (+)
gal3st2 LOC107698869,LOC107745180,LOC107585737,LOC107564367 coding upstream 431158 21285387 ~ 21295902 (+)
efhd1 efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379 coding upstream 463616 21255183 ~ 21263444 (+)
LOC122358818 si:ch211-276c2.2,LOC107698872,LOC107585786,LOC107669856,LOC107739921,LOC108278112,LOC108440474 coding downstream 64036 21791606 ~ 21833216 (+)
clstn2b si:ch211-276c2.2,LOC107698872,LOC107669856,LOC107739921,LOC107585786 coding downstream 115093 21842663 ~ 22014307 (+)
pxylp1 pxylp1,LOC107669877,LOC107558839,LOC107722277,LOC107698201,LOC107585747 coding downstream 324020 22051590 ~ 22065594 (+)
sgpp2 sgpp2,LOC107669878,LOC107705636,LOC107558808,LOC107585790,LOC107722257 coding downstream 439544 22167114 ~ 22174542 (+)
scaf4b LOC107669875,LOC107722265,LOC107670118,LOC107585791,LOC107558831,LOC107705626 coding downstream 455978 22183548 ~ 22205101 (+)
G108553 NA non-coding upstream 109867 21616656 ~ 21617193 (+)
G108427 NA non-coding upstream 524551 21201387 ~ 21202509 (+)
G108418 LOC107086176 non-coding upstream 536687 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 877145 20848722 ~ 20849915 (+)
LOC122359263 NA non-coding upstream 888482 20833494 ~ 20838578 (+)
G108648 NA non-coding downstream 298228 22025798 ~ 22026309 (+)
G108654 LOC107739918,LOC107722272,LOC107722276,LOC107558836,LOC107669876,LOC107585787,LOC107696356,LOC107565148 non-coding downstream 300867 22028437 ~ 22036838 (+)
G108713 NA non-coding downstream 449822 22177392 ~ 22178630 (+)
G108721 NA non-coding downstream 538262 22265832 ~ 22323620 (+)
G108723 NA non-coding downstream 613162 22340732 ~ 22355913 (+)
LOC122358705 NA other upstream 794 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 512567 21211810 ~ 21214493 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 1472789 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 1477088 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 1511581 20208170 ~ 20215479 (+)
G108571 NA other downstream 4411 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 7444 21735014 ~ 21735718 (+)
G108573 NA other downstream 9110 21736680 ~ 21737687 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 1048079 22775649 ~ 22777725 (+)
G108990 NA other downstream 1221570 22949140 ~ 22953513 (+)

Expression


Co-expression Network