LOC122358849


Basic Information

Item Value
gene id LOC122358849
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22346451 ~ 22349630 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU160689
gttTTGTGTTCACCCCGTCCTTAAATCGACTTGGTATGACCCGAGGGAGAGCCTGACAAACAGCCCCGCCCCATTTATAAAGAGCTTGGGCGGCGAAGAAACGTCCCACGACTAAGTTATAATTAGACCTGGTATGCTAACAAGATTATTGTCGATTGAACGCACAGCAATAAAAACTGTGTCTGAGTAAAACATCAAAACGCCTCCTTAGATGAGCTCTCCCTCCCCTGAAGTCATCCTCGGATCAATGTTGATCCCTCCGCAGAACTCCCCAAACAAACGGATCAGGGTGGATTTTCCGAGATCAAGTCCATAAATCCTCTTGGAAACCGAATGGTGGGATTCGTTCCTGTGTTTCTGAGCGCAGACCTTCCTCTATCTCGCTGGAGAGCTGTCGGGACTCGGTACCGATCCGTTTAAAGTTTAATCTGGTAAAGAGGAGAGAAACATGTTTATCCGCAGCAGCGTCAGCCATTTTGTGTTGAACTACAGTAGGCGCGCAAGGACAAAATAGTGCCACTGTAGGGGCACCAAAACGCAGTGTGATTTAATTTACCCTTATAGTTCAAATCACATAAACTgcttaaattaacaaaatatgaattacTATATAATTACTTAATTGATGTAAACTGTCCAACATACACAAACGGTATTAATGACTAATTCATTATTCGCACCTTTGTTGAAAACAATTTTGTGTGTAGAGTTGTGTTACATGTTTTACGGTGAGATTATGTATGACTAAGCTAAATGTAAGTATTATGTATGACTAGGCTAAATAAAATCAGATATTATCACATGATGAACAGAAGACGGAGCACAGAgaacattgtttttctttcgGTGTagatgatcatttatttattgtattaatttacaACAAATGCATAACGTTATGTCTACAATTTGTTGCGATGCaagttaattatttaatctGCAAAATGTGGTTTCATTCACCCTATTTacatcaaataatgttttaggAGAGGAAACAACCCTGAGGGACTCCAGTGCTAAGAGCGAGAGCCCTGGTTGTGAGTTTGCCCAGCCTCACTAAAACTGCTGCCTGTCTGTCAGAAAGCAGGTGATACATTGACAGACAGAGGTGAGCAGAGAGAGCTGTTTCACTTTGTCTGAGAGAAGGTCAGGCTTGTTGGTATTGAAGACCAAACTGAGGTCCACACATAGGATCTCTGCGTAATTCCCAGGCCTGTTGAGGTGTTGTAAGATGATCATAGgttgactgcatcatccacaGACTTGGGAGCGTTAGGACTTGACACCAGTATGATcgcatttaaatgaaagcagTCTGCGCAGCCAACCTCTATCAAGTTTTAGCTGCTGGGATGTGTGTCTCTGTAGCATCTCCTTATCCTCCATCAGCCGATCCTGATGAAGCTGGACAGACATCTAAATACTGAGAGTcctacaataaaacacacacacggtcacATCAACGTCACATCGCAACGTCACATCACATCGTTTAAAGGGGCCATAGAATGcattgataaaatatttaaaattgttctgATATCTACATAGAAGGTATGTGGCTTAGGTAAGGGCAAAAATTCTCCAGAAACTGACTTGCATGTCTGTTTACAACCTTTAAGATTTCTGCCTAGAATGAAAGTCTGTTATTGGATTATTATATGGTAAATAAGGGAGCTGCTATTAATACACTGTCAACTGAAACTGCTTTCAAATGCATTATGgtgtttttactttcactttcactttgaaaatttgCAATTCCAGTTAGAAACGCCAACCTGTCCCTACATTTCACATATGCTGCACTGCCTggaacataaaatgtatttccatgATCTGCCATTTTTGCTATCATCCTGCTTATTTCTTCACAATACTTGCAGAACTTCTGATGGTTTGGTTGGCGGCTGGCTTAGAACACTATTAGTGACTGTTACGGCACAGTCAGCGTTATGTTCAGATTCACCTGTTTTTAAGTGATCCTTTT
>XR_006252647.1
TCAATAATGAAAttcatttaactgaaaatgGAGTGTTAAATCTGgtaattatacattactgacactctattcttGTATTTGATGTTAAgtgctttgaaacaatatgtATGGTTAAAAGCGCTACATCAATAAACTTGACTTGAATGGAGCACCCAGGAAGATCTCTCCCatctttaacaaaataataataaaaataaaacccacaCTAAGCCACAATAATAAGTGTTATAGTAAACAATTGGATTTTCtgtatttcctttaaaaaaaaaaaaaaaaaaaaactaaataaaaaaaaatcgataataatattgataatataatataaaagtaatattgataatatttgttaaaattttgCTGACTATTGTATTTCATACATAAGGATTTTATCCCAAAACTTGATAAATCATAAGTCATTACTAAATTCCTTTTTATtcgcaaaataacaaaatagttTTGTGTTCACCCCGTCCTTAAATCGACTTGGTATGACCCGAGGGAGAGCCTGACAAACAGCCCCGCCCCATTTATAAAGAGCTTGGGCGGCGAAGAAACGTCCCACGACTAAGTTATAATTAGACCTGGTATGCTAACAAGATTATTGTCGATTGAACGCACAGCAATAAAAACTGTGTCTGAGTAAAACATCAAAACGCCTCCTTAGATGAGCTCTCCCTCCCCTGAAGTCATCCTCGGATCAATGTTGATCCCTCCGCAGAACTCCCCAAACAAACGGATCAGGGTGGATTTTCCGAGATCAAGTCCATAAATCCTCTTGGAAACCGAATGGTGGGATTCGTTCCTGTGTTTCTGAGCGCAGACCTTCCTCTATCTCGCTGGAGAGCTGTCGGGACTCGGTACCGATCCGTTTAAAGTTTAATCTGGTAAAGAGGAGAGAAACATGTTTATCCGCAGCAGCGTCAGCCATTTTGTGTTGAACTACAGTAGGCGCGCAAGGACAAAATAGTGCCACTGTAGGGGCACCAAAACGCAGTGTGATTTAATTTACCCTTATAGTTCAAATCACATAAACTgcttaaattaacaaaatatgaattacTATATAATTACTTAATTGATGTAAACTGTCCAACATACACAAACGGTATTAATGACTAATTCATTATTCGCACCTTTGTTGAAAACAATTTTGTGTGTAGAGTTGTGTTACATGTTTTACGGTGAGATTATGTATGACTAAGCTAAATGTAAGTATTATGTATGACTAGGCTAAATAAAATCAGATATTATCACATGATGAACAGAAGACGGAGCACAGAgaacattgtttttctttcgGTGTagatgatcatttatttattgtattaatttacaACAAATGCATAACGTTATGTCTACAATTTGTTGCGATGCaagttaattatttaatctGCAAAATGTGGTTTCATTCACCCTATTTacatcaaataatgttttaggAGAGGAAACAACCCTGAGGGACTCCAGTGCTAAGAGCGAGAGCCCTGGTTGTGAGTTTGCCCAGCCTCACTAAAACTGCTGCCTGTCTGTCAGAAAGCAGGTGATACATTGACAGACAGAGGTGAGCAGAGAGAGCTGTTTCACTTTGTCTGAGAGAAGGTCAGGCTTGTTGGTATTGAAGACCAAACTGAGGTCCACACATAGGATCTCTGCGTAATTCCCAGGCCTGTTGAGGTGTTGTAAGATGATCATAGgttgactgcatcatccacaGACTTGGGAGCGTTAGGACTTGACACCAGTATGATcgcatttaaatgaaagcagTCTGCGCAGCCAACCTCTATCAAGTTTTAGCTGCTGGGATGTGTGTCTCTGTAGCATCTCCTTATCCTCCATCAGCCGATCCTGATGAAGCTGGACAGACATCTAAA

Function

GO:

id name namespace
GO:0043254 regulation of protein-containing complex assembly biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0051128 regulation of cellular component organization biological_process
GO:0022607 cellular component assembly biological_process
GO:0010638 positive regulation of organelle organization biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008154 actin polymerization or depolymerization biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:1902905 positive regulation of supramolecular fiber organization biological_process
GO:0090066 regulation of anatomical structure size biological_process
GO:0051493 regulation of cytoskeleton organization biological_process
GO:0051495 positive regulation of cytoskeleton organization biological_process
GO:0031334 positive regulation of protein-containing complex assembly biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0007015 actin filament organization biological_process
GO:0032970 regulation of actin filament-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0030832 regulation of actin filament length biological_process
GO:0030833 regulation of actin filament polymerization biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0030029 actin filament-based process biological_process
GO:0033043 regulation of organelle organization biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0030041 actin filament polymerization biological_process
GO:0045010 actin nucleation biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:0008064 regulation of actin polymerization or depolymerization biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0032271 regulation of protein polymerization biological_process
GO:0032273 positive regulation of protein polymerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160689 True 1990 lncRNA 0.41 2 22346904 22349630
XR_006252647.1 False 1874 lncRNA 0.38 2 22346451 22349061

Neighbor

gene id symbol gene type direction distance location
grik1b grik1b,LOC107670116,LOC107669874 coding upstream 20744 22295316 ~ 22325707 (+)
LOC122358830 LOC107722268,LOC107585749,LOC107670104 coding upstream 53062 22289930 ~ 22293389 (+)
cldn8.1 cldn8,LOC107722270,LOC107670101,LOC107705635,LOC107669885,LOC107578419 coding upstream 57781 22286790 ~ 22288670 (+)
LOC122358834 zgc:110333,LOC107722269,LOC107670094,LOC107585751,LOC107669883,LOC107705634,LOC107558842 coding upstream 62419 22282680 ~ 22284032 (+)
LOC122358842 NA coding upstream 67223 22277988 ~ 22279228 (+)
slc8a2b slc8a2b,LOC107670115,LOC107725154,LOC107585757,LOC107558827,LOC107669914 coding downstream 10408 22360038 ~ 22443692 (+)
acsl3a acsl3a,acsl3,LOC107585759 coding downstream 97964 22447594 ~ 22471189 (+)
kcne4 LOC107669903,LOC107725203,LOC107733928,LOC107558850,LOC107670090 coding downstream 124374 22474004 ~ 22475711 (+)
scg2a LOC107585745,LOC107670131,LOC107725137 coding downstream 140254 22489884 ~ 22493619 (+)
dhrs12la flj13639,LOC107725108,LOC107670134,LOC107669913,LOC103025652,LOC108433977,LOC108278219 coding downstream 149516 22499146 ~ 22507783 (+)
G108721 NA non-coding upstream 22831 22265832 ~ 22323620 (+)
G108713 NA non-coding upstream 167821 22177392 ~ 22178630 (+)
G108654 LOC107739918,LOC107722272,LOC107722276,LOC107558836,LOC107669876,LOC107585787,LOC107696356,LOC107565148 non-coding upstream 309613 22028437 ~ 22036838 (+)
G108648 NA non-coding upstream 320142 22025798 ~ 22026309 (+)
G108569 LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797 non-coding upstream 618881 21727060 ~ 21727570 (+)
G108736 NA non-coding downstream 42053 22391683 ~ 22446892 (+)
G108743 NA non-coding downstream 152141 22501771 ~ 22511258 (+)
G108740 NA non-coding downstream 173120 22522750 ~ 22564181 (+)
G108762 NA non-coding downstream 183242 22532872 ~ 22533227 (+)
G108777 LOC107731820,LOC107570111,LOC107737423,LOC107670127,LOC107558840,LOC107669915 non-coding downstream 238305 22587935 ~ 22648345 (+)
G108573 NA other upstream 608764 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 610733 21735014 ~ 21735718 (+)
G108571 NA other upstream 613344 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 620185 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 1131958 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 426019 22775649 ~ 22777725 (+)
G108990 NA other downstream 599510 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 606081 22955711 ~ 22959679 (+)
G109132 NA other downstream 897145 23246775 ~ 23271291 (+)
G109193 NA other downstream 1159802 23509432 ~ 23510315 (+)

Expression


Co-expression Network