G108777 (LOC107731820,LOC107570111,LOC107737423,LOC107670127,LOC107558840,LOC107669915)


Basic Information

Item Value
gene id G108777
gene name LOC107731820,LOC107570111,LOC107737423,LOC107670127,LOC107558840,LOC107669915
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22587935 ~ 22648345 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU160772
TCAAAGGTACCTTAAAAGcaactttattaaaaatcatgACACGTACAGGAgcacaaaaaaggcaaaaatctgaaattgtgGTAAACCATAGGATTTAAACGGTCCTGAGCAGCTTAAACGTTGGCAAAGGACTCAAGTGATTGTTCATTAAACCACAAGTACTGATTTTCCTGAGAGAAACTGCCAACTTGACATTCCCTAAATACAAAGTGACCGTGTCAGATTAAAAGAGCGGTGTAAAAATTTACAAGGCAGAGTGTAAATGTGACATTCAGAGCCCACATGGAtcaatgaaaaactaaaatccttttttcttaaaaacacataaGCAGCACCTGAAAGCACCCGACATTCATTAGCACAGATCCAACACGAAagggtattattattattatgatttttttttttaaatcatacataGAGTCCTTGTGGAAATCCACATGAATAAAGCAAAGAAGGACGGATCAACTTTGTGCGTTGAAGTAGAAAATTACGAACATATTGAGGCATCAGGTCAGTTGCAGCAAAACACGGCACTGCAAAATCTAAAAAGACAGGAcgtacaaaaatgaaaactttcagATCAACTTAAAACCATACTCTAGACTGGGTTGGTTTTGGGTGAAAGCGACAATCGAAAGAGCAGGTGATCGAAGGCAGGCCGAATCTGGAGTTTTCCCAAGTGACAACCAGGGAATCTGCAGAGGCAGAAACTGAATGGCCTCACCATTATTCCTTAAAGGGCTGCCAAAAAGAACAGTAAAAGGCACAGAAGATGAATAAATTCCCTAGAGGTCTGCAAGAGAAAGCCAAAGCTCTGGAGACGGAGATGATGTCGATTCATGTAAAACAAGACCAAAATGACAACTAAAGAGGAGAACCGTGAAGCCGGAATTAACTTAAGCttcataaaatgtatgaaaagttGGGAAATTAGAGTGAATCAAATCTAGAGACTTGTCATTTCACgattaaaacatttgcaactAAAAGGGACCTAAAAAGGCCATTTCACCAAACAACTGAGAAGTTTACaacttctcaaaaaaaaaaaaatccctttttttaGAATTGCCAAAATACTCAATTAAAATCGAAAAACTTCACCAGGCCGCGCGTCTATACCGTCTACAGTTTGGCGATTGGTGTAGCAGCTACAGCAATGCTCTCGATGGCGCATTCATCCGTTCCTCGACGGATCCTGAAGAACCCATTCTCGCCGGTCTTATGGCACTTCCCGTACCCCACCAACAGCACGGCGTGATTGGTCAGCTCAAAGGGATTGATGGAGTCACGGAGGCCGGTGTGATGGTAGATGCCCTCCTTGTAGTTCATGAAATCCGGGTACACCTCCAGGGCCACGCCCATGGGGCCGCTCCTGACCAGCTCCAGCATCATGGCCGCCTCGCTGCAGCCGCCGTAAAACCCTCCCACGTAGTGATAATCGGAGGCGTAGTACCTTGAGCATTTCTCAGGTACTTTGCAAGGAGAATCGTCCCCAGTGTACGGGAAACAGTCTTCTTCCACAATGCCAAAGTCCTGGATGTATTTACCAATCAGGTATGGAAAACCTCCGTCACAA
>TU160775
gttttttttttttttGTACCTTAAAAGcaactttattaaaaatcatgACACGTACAGGAgcacaaaaaaggcaaaaatctgaaattgtgGTAAACCATAGGATTTAAACGGTCCTGAGCAGCTTAAACGTTGGCAAAGGACTCAAGTGATTGTTCATTAAACCACAAGTACTGATTTTCCTGAGAGAAACTGCCAACTTGACATTCCCTAAATACAAAGTGACCGTGTCAGATTAAAAGAGCGGTGTAAAAATTTACAAGGCAGAGTGTAAATGTGACATTCAGAGCCCACATGGAtcaatgaaaaactaaaatccttttttcttaaaaacacataaGCAGCACCTGAAAGCACCCGACATTCATTAGCACAGATCCAACACGAAagggtattattattattatgatttttttttttaaatcatacataGAGTCCTTGTGGAAATCCACATGAATAAAGCAAAGAAGGACGGATCAACTTTGTGCGTTGAAGTAGAAAATTACGAACATATTGAGGCATCAGGTCAGTTGCAGCAAAACACGGCACTGCAAAATCTAAAAAGACAGGAcgtacaaaaatgaaaactttcagATCAACTTAAAACCATACTCTAGACTGGGTTGGTTTTGGGTGAAAGCGACAATCGAAAGAGCAGGTGATCGAAGGCAGGCCGAATCTGGAGTTTTCCCAAGTGACAACCAGGGAATCTGCAGAGGCAGAAACTGAATGGCCTCACCATTATTCCTTAAAGGGCTGCCAAAAAGAACAGTAAAAGGCACAGAAGATGAATAAATTCCCTAGAGGTCTGCAAGAGAAAGCCAAAGCTCTGGAGACGGAGATGATGTCGATTCATGTAAAACAAGACCAAAATGACAACTAAAGAGGAGAACCGTGAAGCCGGAATTAACTTAAGCttcataaaatgtatgaaaagttGGGAAATTAGAGTGAATCAAATCTAGAGACTTGTCATTTCACgattaaaacatttgcaactAAAAGGGACCTAAAAAGGCCATTTCACCAAACAACTGAGAAGTTTACaacttctcaaaaaaaaaaaaatccctttttttaGAATTGCCAAAATACTCAATTAAAATCGAAAAACTTCACCAGGCCGCGCGTCTATACCGTCTACAGTTTGGCGATTGGTGTAGCAGCTACAGCAATGCTCTCGATGGCGCATTCATCCGTTCCTCGACGGATCCTGAAGAACCCATTCTCGCCGGTCTTATGGCACTTCCCGTACCCCACCAACAGCACGGCGTGATTGGTCAGCTCAAAGGGATTGATGGAGTCACGGAGGCCGGTGTGATGGTAGATGCCCTCCTTGTAGTTCATGAAATCCGGGTACACCTCCAGGGCCACGCCCATGGGGCCGCTCCTGACCAGCTCCAGCATCATGGCCGCCTCGCTGCAGCCGCCGTAAAACCCTCCCACGTAGTGATAATCGGAGGCGTAGTACCTTGAGCATTTCTCAGGTACTTTGCAAGGAGAATCGTCCCCAGTGTACGGGAAACAGTCTTCTTCCACAATGCCAAAGTCCTGGATGTATTTACCAATCAGGTATGGAAAACCTCCGTCACAA

Function

NR:

description
PREDICTED: rap guanine nucleotide exchange factor 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160772 False 1582 lncRNA 0.43 2 22646719 22648345
TU160775 True 1591 lncRNA 0.42 3 22587935 22648345

Neighbor

gene id symbol gene type direction distance location
zgc:85932 NA coding upstream 18144 22547353 ~ 22569791 (+)
dhrs12la flj13639,LOC107725108,LOC107670134,LOC107669913,LOC103025652,LOC108433977,LOC108278219 coding upstream 80152 22499146 ~ 22507783 (+)
scg2a LOC107585745,LOC107670131,LOC107725137 coding upstream 94316 22489884 ~ 22493619 (+)
kcne4 LOC107669903,LOC107725203,LOC107733928,LOC107558850,LOC107670090 coding upstream 112224 22474004 ~ 22475711 (+)
acsl3a acsl3a,acsl3,LOC107585759 coding upstream 116746 22447594 ~ 22471189 (+)
tyr tyr,LOC107670098,LOC107669900 coding downstream 66161 22714506 ~ 22731196 (+)
naalad2 naalad2,LOC107560856,LOC107737433,LOC107670141,LOC107669901,LOC107731810 coding downstream 103189 22751534 ~ 22764962 (+)
lrrc51 LOC107706076,LOC107558849,LOC107670099,LOC107669906 coding downstream 160435 22808780 ~ 22813270 (+)
LOC122358711 NA coding downstream 175718 22824063 ~ 22834787 (+)
LOC122359066 NA coding downstream 179005 22827350 ~ 22829929 (+)
G108740 NA non-coding upstream 23754 22522750 ~ 22564181 (+)
G108762 NA non-coding upstream 54708 22532872 ~ 22533227 (+)
G108743 NA non-coding upstream 76677 22501771 ~ 22511258 (+)
G108736 NA non-coding upstream 141043 22391683 ~ 22446892 (+)
G108723 NA non-coding upstream 232022 22340732 ~ 22355913 (+)
G108906 LOC107731813,LOC107737424,LOC107558819,LOC107670133,LOC107669866,LOC107570104 non-coding downstream 12640 22660985 ~ 22666293 (+)
G108949 NA non-coding downstream 126433 22774778 ~ 22775573 (+)
G108981 NA non-coding downstream 189340 22837685 ~ 22838122 (+)
G108986 gria4a non-coding downstream 221230 22869575 ~ 22988641 (+)
G109006 LOC104959606 non-coding downstream 350185 22998530 ~ 23006786 (+)
G108573 NA other upstream 850248 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 852217 21735014 ~ 21735718 (+)
G108571 NA other upstream 854828 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 861669 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 1373442 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 127304 22775649 ~ 22777725 (+)
G108990 NA other downstream 300795 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 307366 22955711 ~ 22959679 (+)
G109132 NA other downstream 598430 23246775 ~ 23271291 (+)
G109193 NA other downstream 861087 23509432 ~ 23510315 (+)

Expression


Co-expression Network