G108906 (LOC107731813,LOC107737424,LOC107558819,LOC107670133,LOC107669866,LOC107570104)


Basic Information

Item Value
gene id G108906
gene name LOC107731813,LOC107737424,LOC107558819,LOC107670133,LOC107669866,LOC107570104
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22660985 ~ 22666293 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU160946
ttaattttatgtttttaataatgattgGAAAGATTTCATACCACACCACAACGGTTTCCATGTCaagaaaaagggaaaatgtttttatacagcCGTAAGCGTTTtctcacatttttatttttccccacaAAGCTGCAAGAAACTGGAATATCAACAAATGTCAACGAAAGTCATCTGCAGTACCACGTCAATGATGATCAACATCCTACAGAATCTCTACGTCAGAGAATCAGCAAACACAGGTCccaatatatagatatagatatagatataacgAAAATAGAACCGATCACTTGAGAGTAAAGAATcgcacgcaaaaaaaaaaaaagatgttagcACTTGAGATGGAGTCACGGGGTCGGTTTCGTCCTTCGTTCGCGAACCTGTGCGACACATTCAGAGCCCGGACGCTAAACGGCCGCGTCTCGCCGCTGATAAAAGATCCCGTGTGCTCCAGCAAGCATGATAATGTAAACATCAATGTGAGTCTACTATAGGCAGCAACATTGACATTCAACCCAGAGCTCCTACAAATGCACCGAATGTATCTGTCATGTTCAGAAACCCACTTAACGAAGAGAAACTCGCAAACAGAAACGGAGGGAAAAGGAGAGATCGCCTTCCGGGggctgatttattaatatttcacggGGTCTTTCAAGCATCGTGTTTTTGATCTCGCCGAATCAAATTTAAGCCGTTCCCGACAAACCCGCAGCTGCTTCCAAACGTGCCGCAATAAATCTGTATAATCTCTCCGGCTGTTCCTGTGTACCtgtagcaaaaaaaacccaccaaaGCCTATTACCAAATGACACCCACGGTATAGATCATCTGGAATATTACACAGATTTATGATTCGATGTGCCACCCCGGTGTACGCTCCAAGAGTAAACAAAGAGAAAGGATGACCACAGTATTTTCTCGGAGGAAGTAGTCATTTAGTAAGATGGCGGTGCGGCgagatttaaacattttgagttTCTGGATGTGCAGAATGTAGTAAAAACCATTGCACTTTCTCTGTAATGTTACTTTAGCGGTCCGTTCAGCTAACCGTGTCGTAACCAGGCACAACGCCGCGAGTTTCCAATCGCTGAAGGTGTTTAGCGATGCAGATACGCGTTGGAGAATTTTTGGAGATGTCGCAATAAAGCAGAAATAGAAAGTCAGACTTAGCcctctataaaaataaaaaaggtattgCCATTTTCTGAGTTTAAATCTTGCGATTCTGACCGTTTTTAAAGTCTACATCCAAGAATCTACAACATCTCGctattgactttttttgaatGCTGAACTTACAATCCCCATTTTTGTTGGAATTCTGAGTTTAAATCTTGCAAACGTGACTGTTTTCTATCGGGATTCTAGAAGTCTGCCTCTCGCAAGTCCACTTTGATCTTAGAATTCTTGGAatttaaagtttacatttaaaaaaaaaataaaaattttccctgacagaatTTTTAAACTACATctcacaattaaattttttgtaatgCTGAATTTACAATTcgcaatcatttttatttttttggaattcTGAGTTTACATCccagaattaatttttattggAATTCCAAGTCCACATCTCGCAATACTTTTTTACCTTAGAATTCtaagttatttcatttttataaaatttataaaatttttattgcGTTTAAATCTCGCaactgaattttttaaaatgctgaatttacattttgcaattccGACTTTTTATGATGGAGTTCACGACTcaattttagactttttatgagtttaaatgttgaaattcaGACTTTGTTTGTTAGTAGTACAAATCATGATTTATCATCATACACATCGTTTTAATGTTAGTATTGCTACAACATGTAGTTATCTGGCGTTCGTGTAACTGTCAGTGCGTATCtaaacacattacaaataaaatgtataaaatagcGTTAATTCAAAAGCacgatattttgaaataaaattgtatttcaggGGATTATAAAGCGTCTGAAGGAGATGTGCAGAGTTCAGTGTAGGCAGAAGCATTGATTTTAATGCGAGCGATCTAGTTTTCGAAGCGTATCTGACGTAGATACGGCCTGAATCCCCCGAATTTGACGTCAGAGACGGAGGAAGAGTTCTCATTCACAGAAAGAAGTTGATTAAAAAACTCGACGTAGCACAAATATTGTCTAAAGCTGATGTGCTTTGTATATGCGTATGACTTGTATTGCTTCGAGTCCCAAAGTCtggaatatttataatatatatatatatatataaaaagaatactCATCACCATAAAAACGATTCATATCATTATGTTAcgaaaaaacacacattttggcccTAAAAGCTCTATTAAGATAAATATTACTTgtagatttctcttttttgttttccatataATTGCTAGACACTTGAGTAGCCTCACATTCATCTAAGCACATTCTGTACACAAGGGAATGGTAAGAAAAGACATCTTTAGACTCGTAAAATCTCCTGTTATTCCGTCCTCGTGTAATCCGTGTAAAATGACCGCTATTGTTCAGGTTCGACAATAAGTCGCTATTAAAACTTTACTAGACTTGTTGCTGTGCGCATGCCCTTGATATTTACACAATCGATAGGAGCGATCAATCGAAGTGATTAGAATGGCTTCACGGTGAACTCGTAACTCATTCTTAATGATTCAAAACCTAATAGATAGAATGATAGGATAGATAGAGAAACGATACATCTTTGAGATGACATAAAAAGCCCTTCTTCTAGAGAAAAGTagcatttaaagtcaacatgaaacgctGTTTGCAGCCCATTATACTTCTGTAATGTGACAACTTGCACATAATTTCAGagttaaaacaaatttttcttTGGAATAATGTGCACGGATTGTTTTGAAATAACACCAGGAACGTTTATGAATGAAGTAAGCAtggcgctttttttttttttttttcatgttgactttaggACCGGACCAAAATGGGGTTCGCAGAGTGCTGTGAATTGATTCAGCTCACTAAAGAACCACTGGGGTTTATTAGGGGTGATATGTGTAAGTAAGTACTAAGTACCGTCTGATATTACCACTGTATCATGGTACCGCAATAATTTGGCAATAAATTTGGTCCgaccaaaataaatacaataacaataatacagaTGAATCTCATGAAGATATGTTCATATTATCCCAAACCCCAAGCCACTCCCCACCcccaaaaaaagcaaataaagcaatattaataataataataaatagaaatgactgaatgaatgtgtccatttattaataataataataatgaaatctgTTTGTTAAccactttaaataatatttaccgcaatatttaattatttttcaaattcaaattcttgcaaataaataaatacattttaaataaatattttacttacaGGATGTTACGTGTATTTTAAGATCCTTGCAGTCGTTTTCATGTATTtcgaaaataataaatgatgaattttttgggaaaaaaacaaaaataaattaaaaaatgtatgtagttTTCTATATGCAATCTATTTGTtatagaatgaatgaatgcatcaGTGGATGAATGGACTGCTTGAAATAGAATCTTAAGAGGTTTCATGAGATTCATCCATATATTCTGTTCCTGAAAAGGGCAGGAGAAACACgggaaaagagaaaggaaaaggagAAGGGAATATAATGGACAATGACGGGTGTCTAAGTATCGGTCTGTTTGCTCTCTCACGCTGTCCTGTGGTACATCAAACAAAGCACTTTGTTCAAAGATTGCGTTTGAATCTCAGAAAGCATCGGGGACATCACCTCGCTCTCTTCAGTTATTACAGCGCACCAGCAGTCGCGTACGAGCGTGCGAGCTAACGATTACGCAACATGTAATTATACAGGCTTTTCCCTTCGCTGTCGTGCCTTTTTCCAGCCCTTAATAATCTCATTGTTTGACGATGAACGTAGCAAAAAAAGGCTCGTAATGTCCTTTGTGTGGGAACATCCCCAGGTTGGGCGTTCGTCCACCCCCGTCCTGCTGGGGGCACAACAACATATTGTAGTCCTCATAGAAACAGCACTAATTAGATGAAAGCCATGTTTGTTTAAGGCCACTACCAAAATAGACCAACGGAGCGCCAACTAGACGAACGATTAGACACCGTTGTGATTCTACTGCAGGTCTGATGTTGGAAATATTCCTCCGTAGGGACCGCAACGCCCTGTTTTGCATTGGTCCGAAGGTGAgaacatgtaaacacacacactcaagcagTGTCCGTCTCCGCCTGTGTGAATTACGCCGTTCGGCGCTCCATCCTTCCGTCTGTTGTCCTCATAACGAAGACGAGCTCTGGCTGTAGTGTCGGAGCACCAGGCACTCGTATTTTGGGATGGGCGGAAGAGCGGACGTTTCGGTATCCGATGCGGGAGAGCTTGGCGAGCCGCTGCCCGACCCGACGGAGTCCCTGAACGGGGAGGGCGGAGTCAGCGCCAGCAGTTCCTCAAGCTCCTGCTGATTGGCCGCGACTCAAGAGCCGAGGACACGCCCCCCTTTAGCTCCTTCCCACTGGTCGTGGGTGAAGTTTTGAGTCGCGACGAACTGGAAAGTGGGCAGGGAGGGGCGGGGCGTCCCACGTTAGACTCCACCGGTGGGAGGGGCTGGATTTCGGCATAGGTGGTCATAGTAGTCGGCATGGAGATTTCCCGGGACAGGCGGTAGGCCGGGGGACAGCAGGGCTCCACGGCGTGAGCGTGCGCAGATGCGCTGCTGGACAAACCCACGGCGCCCCCTGGAGGAGAACTGGAGAGCATCATGCTGTTGAGCTCGCTGATGTTAGCGGTGAAGCGGTTCACCACGCAGCTAATCTGCTCCATCAGAGAGCCCTGCGACGCACTTCCACCGCCGTTACCGCGGTGCGGAGGCTGGCACATGTACGTGGAGACGCTCATGACCTGGGAGTCGGCGGCTCCGGCGCTCTGCGATAATGCGATGCTCGCTCTCTGGGTCACGGTGCTGATCGGTGAGGGTGTTTGGGGCCTGTAGGTGATGGGGTAGCGCTCCTCCGCTCCGGTGACCTCGTACAGCATCTTGTTATTGCTGTTGTCTGTGTTGATGTCGCTGCCTCCGCAATAGCGCCCCTCAGACGTTTTGGAGAAAGGTTTGATCACAGCCGTCTGGTTGCTTTCGCGCTTCTTAATGTGGAAGGAGAGACGCTGCCACAGGTGGCCACCTTTGGAACTGCATTCATTCTGGGCCCACGTCACCGACTTCCCATTAGAGCtg

Function

NR:

description
PREDICTED: metabotropic glutamate receptor 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160946 True 5279 lncRNA 0.41 2 22660985 22666293

Neighbor

gene id symbol gene type direction distance location
actn4 actn4,LOC107669904,LOC107570110,LOC106612603 coding upstream 44232 22572491 ~ 22616753 (+)
zgc:85932 NA coding upstream 91194 22547353 ~ 22569791 (+)
dhrs12la flj13639,LOC107725108,LOC107670134,LOC107669913,LOC103025652,LOC108433977,LOC108278219 coding upstream 153202 22499146 ~ 22507783 (+)
scg2a LOC107585745,LOC107670131,LOC107725137 coding upstream 167366 22489884 ~ 22493619 (+)
kcne4 LOC107669903,LOC107725203,LOC107733928,LOC107558850,LOC107670090 coding upstream 185274 22474004 ~ 22475711 (+)
tyr tyr,LOC107670098,LOC107669900 coding downstream 48213 22714506 ~ 22731196 (+)
naalad2 naalad2,LOC107560856,LOC107737433,LOC107670141,LOC107669901,LOC107731810 coding downstream 85241 22751534 ~ 22764962 (+)
lrrc51 LOC107706076,LOC107558849,LOC107670099,LOC107669906 coding downstream 142487 22808780 ~ 22813270 (+)
LOC122358711 NA coding downstream 157770 22824063 ~ 22834787 (+)
LOC122359066 NA coding downstream 161057 22827350 ~ 22829929 (+)
G108777 LOC107731820,LOC107570111,LOC107737423,LOC107670127,LOC107558840,LOC107669915 non-coding upstream 12640 22587935 ~ 22648345 (+)
LOC122358854 NA non-coding upstream 31873 22619676 ~ 22629112 (+)
G108740 NA non-coding upstream 96804 22522750 ~ 22564181 (+)
G108762 NA non-coding upstream 127758 22532872 ~ 22533227 (+)
G108743 NA non-coding upstream 149727 22501771 ~ 22511258 (+)
G108949 NA non-coding downstream 108485 22774778 ~ 22775573 (+)
G108981 NA non-coding downstream 171392 22837685 ~ 22838122 (+)
G108986 gria4a non-coding downstream 203282 22869575 ~ 22988641 (+)
G109006 LOC104959606 non-coding downstream 332237 22998530 ~ 23006786 (+)
LOC122358995 NA non-coding downstream 374777 23041070 ~ 23066216 (+)
G108573 NA other upstream 923298 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 925267 21735014 ~ 21735718 (+)
G108571 NA other upstream 927878 21731981 ~ 21733107 (+)
LOC122358705 NA other upstream 934719 21724404 ~ 21726266 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 1446492 21211810 ~ 21214493 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 109356 22775649 ~ 22777725 (+)
G108990 NA other downstream 282847 22949140 ~ 22953513 (+)
msantd4 msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841 other downstream 289418 22955711 ~ 22959679 (+)
G109132 NA other downstream 580482 23246775 ~ 23271291 (+)
G109193 NA other downstream 843139 23509432 ~ 23510315 (+)

Expression


Co-expression Network