msantd4 (msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841)


Basic Information

Item Value
gene id msantd4
gene name msantd4,LOC107566896,LOC107725759,LOC107670113,LOC107689580,LOC107756207,LOC107560841
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 22955711 ~ 22959679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU161085
GGGGCGCGACGCGTGTGGACGGAGCGCTTGACGCTTTTCTCCGCCGGAGACCAGATGTTCAGATCCTGCTGTCGTTTTGCGTGACCTCTGCATGACCTCAACACTTTCCCGCTCTAACGCGTGTCGGCGTGAACCCGAAGATGCGTCCGGAGTGACGGGATCCGTCCAGCGCCGAGCACCCCGTCGTCTCCAGCATGGACTTCCTGCAGATGAAGCACCTGAAGAGGAAGCGGAAGAGCAACTACAGCGTGAAGGAGACGCAGACTCTGATCCGAGAGATCCACAAGCGGCGCGAGATCCTGTTCTCCCGCCAGCAGAACATGGCCATCAACGAGCTGAAGCGGCGGGCGTGGGAGGAGGTGGCGGACAGCGTGAACGCCCTCGGTGAGGGCGAGCTGCGCACGGCGGCCGAGGTCAAGCGGCGGTACCTGGACTGGCGCGCGCTGATGAAACGGAAGCAGCTCCAGGCCGAGTTGGCGACGGGGTTGAAGCAGGAGTTTGAAGCGTCGTCGCCCGACAACGACGCGTCTCTGGGTGGTGGCGACCAGTCGCTGGACCTCAGCGGCTTTTCCAAAGACTCGTCGTGCGACTGGCAGGACCTGACGGACCTCGGGGAGCCCAGCTCGCACACGCCTGGAGTCAAAATGGAGGACGATGAGGCCAGCAGCTACAGATTGGAGGCGGAGGTTGGTGAAGGTGGTGAGGGTGAAGAAGACGATGAAGACTGTTTCCCTCCATCCTCCCTGATATGGACCGCGAGGGCCGGGTTTCTGAGGTCTTCGCTCACATCGACGAATTCGGCGTGCTGAGCTCCACGAAGCCTGCGTCGGGCCCGGCCGTGAGTCGAGACCTGGGGCTCGGAGTCGGGAGCGTGTGCGGGATGGGCGTAGCTGGCCTGGGCCTGACCGGAGGGGAGAACACAAGCCTCCTGGTGGCGCTGGAGAGGCAGAGACTGGACCTGGAGAAGCACCGCTTACAGGTGGAGTCCGAGCGGCTGCAGGTGGAGAAAGAGCGCCTCCTGGTGGAGAAGGAGCGGCTGAGGCAGGGCGAGGTGGAGAGAGAGCGGCTGCAGCTGGAGAAAGAGCGTCTGCAGGTGGAGCGGGAGCGACTGCGACTGCAGCTGCAGCAGAACACGCCCCTCCAGCAGAGCCCCGCCCCCTCTACGTCTGTGGCCACGCCCACCACGTCGTCCTCCGCCCCCTCGTCGTCCTCACTGGACGGGGAGAAGGACAGGAAGATGGCTTGGCCGACGGCGGTGGATCTGGAGGCGGAGAAGCTGAAGCTAGAGAAAGAGCGCCTCCTGCTGGAGAAGGAGAGACTGCAGTTCTTCAAGTTTGAGTCGGGGAGACTGCAGATTGAGAAGGAGCGCCTGCAGGTGGAGAAAGAGA
>XM_043259769.1
TGTCGGAAGTGTTCGGCGCAGCTCGGCCGTGGAGGCGGGGCGCGACGCGTGTGGACGGAGCGCTTGACGCTTTTCTCCGCCGGAGACCAGATGTTCAGATCCTGCTGTCGTTTTGCGTGACCTCTGCATGACCTCAACACTTTCCCGCTCTAACGCGTGTCGGCGTGAACCCGAAGATGCGTCCGGAGTGACGGGATCCGTCCAGCGCCGAGCACCCCGTCGTCTCCAGCATGGACTTCCTGCAGATGAAGCACCTGAAGAGGAAGCGGAAGAGCAACTACAGCGTGAAGGAGACGCAGACTCTGATCCGAGAGATCCACAAGCGGCGCGAGATCCTGTTCTCCCGCCAGCAGAACATGGCCATCAACGAGCTGAAGCGGCGGGCGTGGGAGGAGGTGGCGGACAGCGTGAACGCCCTCGGTGAGGGCGAGCTGCGCACGGCGGCCGAGGTCAAGCGGCGGTACCTGGACTGGCGCGCGCTGATGAAACGGAAGCAGCTCCAGGCCGAGTTGGCGACGGGGTTGAAGCAGGAGTTTGAAGCGTCGTCGCCCGACAACGACGCGTCTCTGGGTGGTGGCGACCAGTCGCTGGACCTCAGCGGCTTTTCCAAAGACTCGTCGTGCGACTGGCAGGACCTGACGGACCTCGGGGAGCCCAGCTCGCACACGCCTGGAGTCAAAATGGAGGACGATGAGGCCAGCAGCTACAGATTGGAGGCGGAGGTTGGTGAAGGTGGTGAGGGTGAAGAAGACGATGAAGACTGTTTCCCCATCCTCCCTGATATGGACCGCGAGGGCCGGGTTTCTGAGGTCTTCGCTCACATCGACGAATTCGGCGTGCTGAGCTCCACGAAGCCTGCGTCGGGCCCGGCCGTGAGTCGAGACCTGGGGCTCGGAGTCGGGAGCGTGTGCGGGATGGGCGTAGCTGGCCTGGGCCTGACCGGAGGGGAGAACACAAGCCTCCTGGTGGCGCTGGAGAGGCAGAGACTGGACCTGGAGAAGCACCGCTTACAGGTGGAGTCCGAGCGGCTGCAGGTGGAGAAAGAGCGCCTCCTGGTGGAGAAGGAGCGGCTGAGGCAGGGCGAGGTGGAGAGAGAGCGGCTGCAGCTGGAGAAAGAGCGTCTGCAGGTGGAGCGGGAGCGACTGCGACTGCAGCTGCAGCAGAACACGCCCCTCCAGCAGAGCCCCGCCCCCTCTACGTCTGTGGCCACGCCCACCACGTCGTCCTCCGCCCCCTCGTCGTCCTCACTGGACGGGGAGAAGGACAGGAAGATGGCTTGGCCGACGGCGGTGGATCTGGAGGCGGAGAAGCTGAAGCTAGAGAAAGAGCGCCTCCTGCTGGAGAAGGAGAGACTGCAGTTCTTCAAGTTTGAGTCGGGGAGACTGCAGATTGAGAAGGAGCGCCTGCAGGTGGAGAAAGAGAGGCTGCAGCTTCACAAAGATGGACAACAGATGGCGCTGCACTCGTGAAGCGCCGTGCGTGTATAGCTAGGTAGGGAAAGATTGGGACCGTAGTTATCCATTCATTTTaacgggggaaaaaaatctgtttttttgtgtgtttttttgcactttaaataaagcaattctATTTCTGTGAGacgtttgaaaaagaaaaaaggcaagCAATGATTGCGAGACATTTATAGACAAGACGCACGTGGACtcagttttgaaaatatgtttttaaaaatagatactgAAAGATAAGTGGATGCCAGGAATTACctca

Function

symbol description
msantd4 Orthologous to human MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils).

NR:

description
myb/SANT-like DNA-binding domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161085 False 1388 TUCP 0.64 3 22955747 22959370
XM_043259769.1 True 1731 mRNA 0.59 4 22955711 22959679

Neighbor

gene id symbol gene type direction distance location
gucy1a2 gucy1a2,LOC107566890,LOC107706059,LOC107669873,LOC107725744 coding upstream 17779 22908551 ~ 22937932 (+)
cwf19l2 cwf19l2,LOC107670086,LOC107706063,LOC107728743,LOC107669872,LOC107566889,LOC107560834 coding upstream 58037 22877852 ~ 22897674 (+)
LOC122358713 NA coding upstream 98272 22856477 ~ 22857439 (+)
LOC122359065 NA coding upstream 98895 22853258 ~ 22856816 (+)
LOC122359069 NA coding upstream 107833 22844910 ~ 22847878 (+)
pdgfd LOC107689581,LOC107670136,LOC107756229,LOC107725770 coding downstream 131246 23090925 ~ 23114178 (+)
fzd4 fzd4,LOC107600811,LOC107551868,LOC107725773 coding downstream 298071 23257750 ~ 23262190 (+)
LOC122358508 parl,LOC107670111,LOC107689587,LOC107725764 coding downstream 412981 23372660 ~ 23378269 (+)
atg16l1 LOC107689588,LOC107551872,LOC107670107,LOC107600818 coding downstream 416899 23376578 ~ 23400826 (+)
cldn15lb cldn15lb,LOC107577838,LOC107725763,LOC107670109,LOC107689589,LOC107551871,LOC107578549 coding downstream 419031 23378710 ~ 23385104 (+)
G108981 NA non-coding upstream 117589 22837685 ~ 22838122 (+)
G108949 NA non-coding upstream 180138 22774778 ~ 22775573 (+)
G108906 LOC107731813,LOC107737424,LOC107558819,LOC107670133,LOC107669866,LOC107570104 non-coding upstream 289418 22660985 ~ 22666293 (+)
G108777 LOC107731820,LOC107570111,LOC107737423,LOC107670127,LOC107558840,LOC107669915 non-coding upstream 307366 22587935 ~ 22648345 (+)
G109006 LOC104959606 non-coding downstream 38851 22998530 ~ 23006786 (+)
LOC122358995 NA non-coding downstream 81391 23041070 ~ 23066216 (+)
G109017 NA non-coding downstream 151877 23111556 ~ 23113058 (+)
G109018 NA non-coding downstream 157150 23116829 ~ 23117749 (+)
G109030 NA non-coding downstream 180551 23140230 ~ 23141517 (+)
G108990 NA other upstream 2198 22949140 ~ 22953513 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other upstream 177986 22775649 ~ 22777725 (+)
G108573 NA other upstream 1218024 21736680 ~ 21737687 (+)
G108572 LOC107745176,LOC107698871 other upstream 1219993 21735014 ~ 21735718 (+)
G108571 NA other upstream 1222604 21731981 ~ 21733107 (+)
G109132 NA other downstream 287096 23246775 ~ 23271291 (+)
G109193 NA other downstream 549753 23509432 ~ 23510315 (+)

Expression


Co-expression Network