dhx40 (dhx40,LOC107659925)


Basic Information

Item Value
gene id dhx40
gene name dhx40,LOC107659925
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 10286955 ~ 10299275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258185.1
TTAAACGGCACACAAACGATCGTAGACATGCCAAAATCAGAGAAGAGCGGAGAAACCGAGAAACGCGAATCCAGAAAGCTGCCTATTTATCAGCACAAAGATAAACTCATCCAGGCTGTGGAGGAAAACACATTCCTGATCGTGACAGGTGAAACTGGCAGCGGAAAGACCACTCAGCTACCCCAGTATTTGTATAAAGCGGgTCTTTGCAGGAATGGCAGGATTGGTGTGACTCAGCCCAGGAGGGTTGCAGCCATCACTGTAGCCCAGAGGGTGTCCCATGAGATGGGGGTCCGGCTGGGTCAGGAGGTGGGCTACCAAGTGCGCTTCGATGACTGCTCGACACAGGACACTATGATTAAATACATGACAGATGGCTGTATGCTGAGGGAGATTCTTGCAGATCCCAGTTTATCACAGTACAGCATTGTGGTCCTGGATGAAGCGCATGAGAGGAGCCTGAATACAgatgttttgCTTGGGTTACTCAAGAAAACCCTGTCAAAAGGTTCCCGTGGTCGTAAAACACCACTCAAAGTGGTTGTGATGTCAGCAACATTAGAAACGGAAAAGCTCAGCTCCTTTTATGAAAACTGTCCTGTATTCATGATTCCTGGACGCACATATCCGGTCAAGGAGAAGTTCTGTAATTGTATTGGGCCGAAAGACAAAGATAGTTCTGTCTATGTCAAAGAGGTGGTAAAGATGACTTTAGACGTGCACACTAATGAAGCAGCTGGTGATATTTTGGTCTTCCTCACTGGACAGTCTGAAATCGAGAAAGCTTGTGATTTGCTCTTTGAGAAGGCTGAGATCTTGGACTACCGTTATGATGTCCATGACCGGACCGTTGAAGGCCTGCTTATCCTGCCTTTATATGGATCCATGCCAACAGatcaGCAAAGACAAATATTCCAGCCTGCACCAAAAGGTGTGAGGAAGTGTGTGGTCGCGACGAATATTGCTGCAACCTCACTCACAATTGATggaataagATATATCGTTGACAGTGGATTTGTCAAACAACTAAATCACAACTCAAATGTTGGCTTGGATATTTTGGAAGTGGTACCTATTTCAAAAAGTGAGGCTCAGCAAAGAGCGGGCAGGGCTGGACGAACCTCAGCAGGAAAATGCTTCAGGATTTACAGTAAAGACTTCTGGGACACATGTATGCTTGAGTACACCATTCCAGAGATTCAGCGCACCAGTCTAACATCTGTCATTCTCACACTGAAATGTCTCGGTATCCATGATGTGATTAGATTTCCTTACGTGGATTGCCCAGAGGAACGCTTTATCCTGACCGCTCTGAAACAGCTGTATCAGTATGATGCTATTGACAGGAGAGGTGAAGTGACCAGGCTGGGGAGGTTGATGGTGGAGTTTCCTCTTCCTCCGAATCTTACTCGAGCTTTGCTCAAAGCTGCTGCTCTCGGGTGTGAAGACGTAATGCTGCCCGTAGCAGCCATGCTCTCAGTAGAGAACATCTTCATTCGACCAGgtaaacCAGAAGGACAAAAGGAAGCAGAGATCAGACACAAAGAGATAGCAGCTAGTGCTGGCGGCTCCAATGATTTCCTCATGCTGCTCTGTGTGTTTGAGATGTGCAGAGCGAGCGACAATCCGTCCGCGTGGTGCAAAGAGCACTGGATCCACTGGCGAGCCGTGAAGTCAGCCTTCAGCGTTGAGACTCAGCTCAGGGAGATTCTTCTTCGCCTCAAGCAGCTGAAAGACTTTCCACGTGAGACGTTTGAGGGCAGTCGGAGTGAACTGCTGCGGCAGTGCCTCTGCTTGGGGTACTTCACCAATGTAGCCAGGAGATCTATTGGGAAATCATTCTGCACCATGGATGGACATGGGTCGAGCGTTCTCGTTCACCCTTCATCATGCCTCTTTGGTCAAGAATTGCATCTGGATTGGATCATCTTCCATGACGTGTTGGTCACCTCGCGGGTGTACGTGAGAACAGTTTGTCCCATCCGTTACGACTGGGTAAAGGACCTGTTGCCGAAGCTGCACGAAATCGACGTCTATGAACTGAGTAGCGTTGCTAGGGAAGAGGTAACCGATGAAGAGATGGCGCAGTGGGAGAAGAAAGAGGCAGCAAAAAGACAAGCAGAAGCCCGGGAGGATGCGGCGAAGAAGCTGGAAAAGCGAAACGATGAAAGCTCGATCACAGAGGCTCGCGCTCGCTATTTGGAGCGAAAACAGCATCGGCTGCAAAGAAAGGGCACATGAGAGGATCAAACACTCACTGCTGATACTGCAGCTGCTAAAAACAAATACgaaaaagactttttaatcTCAGATTTTAAAACGTAATCCTCATTTACTGCCATAGCACTCTGGTCCCTGCAGATTTTGACTTTGGCTGTTGAGTCATATGTAATATACgttttatatctttttatgtaaataaattgttttttttactta
>XM_043258186.1
GAAAGCTGCCTATTTATCAGCACAAAGATAAACTCATCCAGGCTGTGGAGGAAAACACATTCCTGATCGTGACAGGTGAAACTGGCAGCGGAAAGACCACTCAGCTACCCCAGTATTTGTATAAAGCGGGTATgTCTTTGCAGGAATGGCAGGATTGGTGTGACTCAGCCCAGGAGGGTTGCAGCCATCACTGTAGCCCAGAGGGTGTCCCATGAGATGGGGGTCCGGCTGGGTCAGGAGGTGGGCTACCAAGTGCGCTTCGATGACTGCTCGACACAGGACACTATGATTAAATACATGACAGATGGCTGTATGCTGAGGGAGATTCTTGCAGATCCCAGTTTATCACAGTACAGCATTGTGGTCCTGGATGAAGCGCATGAGAGGAGCCTGAATACAgatgttttgCTTGGGTTACTCAAGAAAACCCTGTCAAAAGGTTCCCGTGGTCGTAAAACACCACTCAAAGTGGTTGTGATGTCAGCAACATTAGAAACGGAAAAGCTCAGCTCCTTTTATGAAAACTGTCCTGTATTCATGATTCCTGGACGCACATATCCGGTCAAGGAGAAGTTCTGTAATTGTATTGGGCCGAAAGACAAAGATAGTTCTGTCTATGTCAAAGAGGTGGTAAAGATGACTTTAGACGTGCACACTAATGAAGCAGCTGGTGATATTTTGGTCTTCCTCACTGGACAGTCTGAAATCGAGAAAGCTTGTGATTTGCTCTTTGAGAAGGCTGAGATCTTGGACTACCGTTATGATGTCCATGACCGGACCGTTGAAGGCCTGCTTATCCTGCCTTTATATGGATCCATGCCAACAGatcaGCAAAGACAAATATTCCAGCCTGCACCAAAAGGTGTGAGGAAGTGTGTGGTCGCGACGAATATTGCTGCAACCTCACTCACAATTGATggaataagATATATCGTTGACAGTGGATTTGTCAAACAACTAAATCACAACTCAAATGTTGGCTTGGATATTTTGGAAGTGGTACCTATTTCAAAAAGTGAGGCTCAGCAAAGAGCGGGCAGGGCTGGACGAACCTCAGCAGGAAAATGCTTCAGGATTTACAGTAAAGACTTCTGGGACACATGTATGCTTGAGTACACCATTCCAGAGATTCAGCGCACCAGTCTAACATCTGTCATTCTCACACTGAAATGTCTCGGTATCCATGATGTGATTAGATTTCCTTACGTGGATTGCCCAGAGGAACGCTTTATCCTGACCGCTCTGAAACAGCTGTATCAGTATGATGCTATTGACAGGAGAGGTGAAGTGACCAGGCTGGGGAGGTTGATGGTGGAGTTTCCTCTTCCTCCGAATCTTACTCGAGCTTTGCTCAAAGCTGCTGCTCTCGGGTGTGAAGACGTAATGCTGCCCGTAGCAGCCATGCTCTCAGTAGAGAACATCTTCATTCGACCAGgtaaacCAGAAGGACAAAAGGAAGCAGAGATCAGACACAAAGAGATAGCAGCTAGTGCTGGCGGCTCCAATGATTTCCTCATGCTGCTCTGTGTGTTTGAGATGTGCAGAGCGAGCGACAATCCGTCCGCGTGGTGCAAAGAGCACTGGATCCACTGGCGAGCCGTGAAGTCAGCCTTCAGCGTTGAGACTCAGCTCAGGGAGATTCTTCTTCGCCTCAAGCAGCTGAAAGACTTTCCACGTGAGACGTTTGAGGGCAGTCGGAGTGAACTGCTGCGGCAGTGCCTCTGCTTGGGGTACTTCACCAATGTAGCCAGGAGATCTATTGGGAAATCATTCTGCACCATGGATGGACATGGGTCGAGCGTTCTCGTTCACCCTTCATCATGCCTCTTTGGTCAAGAATTGCATCTGGATTGGATCATCTTCCATGACGTGTTGGTCACCTCGCGGGTGTACGTGAGAACAGTTTGTCCCATCCGTTACGACTGGGTAAAGGACCTGTTGCCGAAGCTGCACGAAATCGACGTCTATGAACTGAGTAGCGTTGCTAGGGAAGAGGTAACCGATGAAGAGATGGCGCAGTGGGAGAAGAAAGAGGCAGCAAAAAGACAAGCAGAAGCCCGGGAGGATGCGGCGAAGAAGCTGGAAAAGCGAAACGATGAAAGCTCGATCACAGAGGCTCGCGCTCGCTATTTGGAGCGAAAACAGCATCGGCTGCAAAGAAAGGGCACATGAGAGGATCAAACACTCACTGCTGATACTGCAGCTGCTAAAAACAAATACgaaaaagactttttaatcTCAGATTTTAAAACGTAATCCTCATTTACTGCCATAGCACTCTGGTCCCTGCAGATTTTGACTTTGGCTGTTGAGTCATATGTAATATACgttttatatctttttatgtaaataaattgttttttttactta

Function

symbol description
dhx40 Predicted to enable RNA binding activity. Orthologous to human DHX40 (DEAH-box helicase 40).

NR:

description
probable ATP-dependent RNA helicase DHX40

GO: NA

KEGG:

id description
K18711 DHX40, DDX40; ATP-dependent RNA helicase DHX40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258185.1 True 2439 mRNA 0.47 18 10286955 10299275
XM_043258186.1 False 2370 mRNA 0.47 17 10292462 10299275

Neighbor

gene id symbol gene type direction distance location
LOC122358538 NA coding upstream 45707 10238177 ~ 10241248 (+)
relb LOC107715143,LOC107582588,LOC107701429,LOC107659928,LOC107727919,LOC107554269 coding upstream 87677 10190587 ~ 10199278 (+)
clptm1 clptm1,LOC107727917,LOC107715057 coding upstream 99784 10179266 ~ 10187171 (+)
gdpd1 gdpd1,LOC107672421,LOC107554273,LOC107659934 coding upstream 194005 10086677 ~ 10092950 (+)
galnt17 wbscr17,LOC107714690,LOC107582595,LOC107727938,LOC107554251,LOC108411682 coding upstream 321279 9949393 ~ 9965676 (+)
cltcb cltcb,cltc,LOC107554261,LOC107659923,LOC108443353 coding downstream 1065 10300340 ~ 10325420 (+)
vmp1 vmp1,LOC107582631 coding downstream 26630 10325905 ~ 10336412 (+)
rps6kb1b rps6kb1b,rps6kb1,LOC107701421,LOC107597508,LOC107659922,LOC108443350 coding downstream 44161 10343436 ~ 10350306 (+)
LOC122358985 LOC107701419,LOC107713466,LOC107728785,LOC107597592,LOC100001991,LOC107582628 coding downstream 132290 10431565 ~ 10441298 (+)
LOC122359095 LOC107713423,LOC107701398,LOC107659919,LOC107717187,LOC107597513,LOC107582627 coding downstream 222418 10521693 ~ 10539063 (+)
G105242 NA non-coding upstream 108729 10177872 ~ 10178226 (+)
LOC122358545 NA non-coding upstream 109127 10171862 ~ 10177828 (+)
G105240 NA non-coding upstream 111333 10173307 ~ 10175622 (+)
G105199 LOC107582590,LOC107715485,LOC107701431 non-coding upstream 117243 10149962 ~ 10169712 (+)
G105225 NA non-coding upstream 155090 10129551 ~ 10131865 (+)
G105395 NA non-coding downstream 37491 10336766 ~ 10337446 (+)
G105411 NA non-coding downstream 88208 10387483 ~ 10387744 (+)
G105413 NA non-coding downstream 92184 10391459 ~ 10391718 (+)
G105416 NA non-coding downstream 105744 10405019 ~ 10405333 (+)
G105458 NA non-coding downstream 164927 10464202 ~ 10464899 (+)
G105248 NA other upstream 79503 10204839 ~ 10207452 (+)
ypel2b LOC107659943,LOC101067200,LOC106931471,LOC106940241,LOC106603438 other upstream 176512 10093455 ~ 10110443 (+)
dusp14 dusp14,LOC107661112,LOC107672422,LOC107727911,LOC107554288,LOC107713882,LOC107582606 other upstream 571266 9703426 ~ 9715689 (+)
G105011 NA other upstream 613610 9669634 ~ 9673345 (+)
traf4a traf4,traf4a,LOC107727926,LOC107758738,LOC107672397,LOC107661115 other upstream 662983 9588789 ~ 9623972 (+)
snx19b LOC107713467,LOC107701420,LOC107659921,LOC107728781,LOC107597509 other downstream 53886 10353161 ~ 10390600 (+)
G105513 zbtb16b,zbtb16,LOC107597519,LOC107748597,LOC107582577,LOC107701406,LOC107713452,LOC108278332 other downstream 422697 10721972 ~ 10728395 (+)
LOC122358628 NA other downstream 1070973 11370248 ~ 11372691 (+)
LOC122358755 LOC107729119,LOC107586264,LOC107597546,LOC108425821,LOC107662788 other downstream 1728280 12027555 ~ 12030549 (+)
tnfaip1 tnfaip1,LOC107586309,LOC107729096,LOC107662792,LOC107657549,LOC107597551,LOC107728221,LOC108425816 other downstream 1794682 12093957 ~ 12097646 (+)

Expression


Co-expression Network