LOC122358393 (sel1l3,LOC107675880,LOC107585777,LOC559843,LOC107686521)


Basic Information

Item Value
gene id LOC122358393
gene name sel1l3,LOC107675880,LOC107585777,LOC559843,LOC107686521
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 20439195 ~ 20448086 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258187.1
TAATGAAAGTTGAGACGTTCCTTGGCGTTCCTGCAAAAGGCACCGTTAtagcatatttttaacatattttgctagcttattattattattgaacgTGTAGGGAAAAACGTGTGCCGAAGCAAAATACGGTTGCCCAGAATCTCACACAGCGCTTAACCTGAGAGTAATTATTCATGAGCTAAGTTTGCGTTCGAGGGTGGAACTCATCCGTTGTGTTTGCTTAAACTCTTCCACCTGCAGCTCAAACAGGATGTTATTCCGGGCCTGTTGACGGGCTCGGGTACCTGCTCTGGCGTCTGATCACAAGAAATCCTCCTCTGCGACGGTCTTTGATGCGGATATGGTGCAACCAGCCAAATAACGCAACGATATGCGCGACTGTGCACCATGAACGCAGCAAAAACCCAATTTTAGTCATACACGAGTGGCTTCGTTTAATCCAAAACTTCTGGTGGTTGTTGGGTTTCGCAGAGGAATGATGGGAGACCCGCCAAAGATATTTTACCGCTTGTGTTTACGCGTTATTATTTCTATGTCTTTAACTGAGTGCCTGAGCCGATCCAGCGCAGGTAACGTGGCTTTCCTTGACGCACCTGACGCGCCGGTGTCCACCTGGAACCTACCCGTTAAGTACAGCTGTTTCCAGGCGTCCGCAGTGCATGTCCAGGTTCTGGTTTCTTTCGATACCGGCTCTACCTCAGTCGTTTTCCACAAATACTGGACCTGCGATCCGGGACGTGCCAGAACCCGAGTGGTGTCCGTGAATTTTCCTGACTGGCTCGTGTACAGACCTGATTGGATAATACGCGGTTCCGATTGGGTTCTCAGCTGCTTATTGCGCGCTTGGATCGGACCGGATGAGTCCACCGGACCTGGCAGGTTTCCCGGAACCAGTGTGACTGTTCCCCTTGATATTCACTCGCCGCTGAGTCGACCCTTCAAACAACACCAGCTTTGTGCCAAATGGGACACAGATTTGCTGTGGAGAGTCAGAAGAGATGACAGTCCACAGTGCTTGGAGGAAAATGAGGTGGTATCTCTTCTTTCCACAATTTATGCTTGTACTGGTGAACGTTATGGCATCATCAAAACCCTCCGGCCGTTCAGAAGCGAAGTTTTGGAAGGATTGAGAACCAAATCCATCTATTATCCCTGGTTTGCTGTTTCGCTTTGGGTTTTGGTGGAGAAACCTTGCAGTGACCACTTATGTGGACTACTGCTCCACATCGATGCTGAAAACAATTACGCCACCCCTACAATATTCCTCACAGACGCTGGTAAGATTCATGTCCAGGTGCATGGAGATGCTGGGCACTCCTCAGCATTCCTTTCATCTTTTAAGGTTCCTCTTCATCGGTGGTGTCGTATCAGCCTTGAGATTCTGGGGCGTGTGGCAAAAATTTCTATTGCATGTATGGAAGGGCAGCGGAAATACTCCAGCACAGCTGAGCATGTATTTGGCAAGAACGTCATGCTGGATGACACGCATGGATATTTTGTGATTGGTGGAGGTAAATTTATACAAGGCATTGAAGGGTATTATGGACCAGCTACATATTATCGTATACAGGGGCTCCCAGCTGACCAGGCTGAGATTCACCTGCCTCCTATAATATCAAAAGTGAATATAACCGGATGGTTCCAGTCTTGTGAGAATTTCAAATCCGAGCTGTTTCTGTCTGTAACGGATCACTCTCTTACAGTAAAGAGACCCCCAGGCAGCTGTTTGGACACGTACACAGAGCTGCTACTGAATCACAGTAACGCCAACTCCGCAGAACAGTGCGTGCTCTTCGAAACAAACCCTCACAGGCGCCAAGTTGCACGGCTGACCAAACTAGTATCACAGAAATATGGCAGGGTGAGCGCATCAGCTGTGGGCAGGATTCTGTACGCTCTAGTCGTCCGTAAGATCGGTGCCGCTCACAGTCTGGATGTTATAACCAGGATGATGCCTTTCCTGCTGAGGTCTGGCTGTTTGGGAGACGACAGAGCACTGCATCTGTCCTCTGTGCTGTACAGCAGTGGATTCGGAGTCAGGAGACAGCCGtataagGCCTGGCTGTTGTCCCTCTTGTCAGCTCGGAAGGATTGGAGGTTGGCTCTCTTACGTTTAGGGCACATGCACCATGTCGGTGACCTGGAGGTGACCCCTGATCGTGACCTTTCCTATGCTTATTACGTTAACATCGCCAGACAAACCAGCACTGATCAGAAGAATCCCTCCCCACAGCAAACCTTTGTTGAGTTAATACGTTTAAATGATGAAGAGACCCTGAAGGCCCAAACCAATGAAAACGATGATCTGTTTCACTGGCTGAAGCTTCAGGCGCGAAGTGGAGTGGCTGAAGCTGAGcaAGCAATGGGGCGCATGTTATTCTGGGGTCAGCAGGGAGTGTCTCCAGACATTCAGACAGCAGTGAAACACTATGAGAGAGGTGCCACCAAACTCAATGACCCTGTGTCCATGTACGACTACGCTATTGTGCTCCTTACGGGCCAAGGAGTTCCAAAAGATGTTCAGAGAGCCGTTATGTTCCTGAAGAAAGCAATAGAACAGGGCTCTGTTCCGGCTATCACTGCTCTGGGCTGGTACTACGAGCAGTATGAGAAGGATTACGAGAAGGCTGTACATCTGTGGGAAGAAGCCGAGGCCAAAGGTCACCCTGATGCCGCTATGAATCTGGGGGTTTTCTACTCTCAGGGCCTGTATCCTGGACAAGCTGCCGACCAGtttgaGGCATATAAGTACTATTTAAAGTCAGCCCAGCGAGGACACTTAAACGGTGGCATTGAATTGGCCGATGTTTGGATACATGGGATTCCCAGCCGAGTTGCCAGACGCCCAGCAGATGCTGTTCTTTGGGTTAAATGGGCGTCTGAACAGAATGGATATCTGGGAACGGTCTTGAGGAACGGACTGAATGCCTACTTCAGAGGAAACTGGATCATGTCTTTGATTTATTATCTGAGTGCAGCAGAGAGTGGATTTGAAGCAGCTCAGTTTAATGTGGCGTACCTGTGCGAACTCAACTCAGGCTCTTTGGATCCAGTGCTGGTGACTCGGTGCATGTTGAGATATTATAACATGTCGATACAGGCTCAAGATCCGGCTGCTTACGCTTTGATTAGAATGGGAGATTTGTTCTATGGTGAGCAGGCTTTGGGCAGAAAAGAGGTTTCTGATGCCGCAGAGCTTTATAAGCAAGCAGCTCTCAAGAACGAACCACAGGGTTGGTATAATCTTGGCCTGCTTGTCCAAAGCGGGGAGTCTCTGCCGTTCAGCGTGCTTTCTGAGCTCAATTTGCTTCACCTTCACTTAACAGACCGACAGACGCTTCTCAGCGCCCTGTTCCAAAGATGTAGAGAGACCAATAGCAGCGACGCCTACCTGCCCTGCACACTGGCGCTGTTCAGCACACACCTGCAATCTTTACAACTACACCAAGATACTGCAATAAAGCTCATTGCCACAATTTCGGCTGCAGTCGGAGCTCTGTCTTTTGTGTTCGGACTGATTAAATGGAGGACAGCGCCACTCAACCAAACATCTCGATCCCAAACATCAGCTTCCAGCCAAAACCAAGAGGAGGAGGAATCCTAAAGAATGActtttagtagtttttattatttttttttttaatagcagttCTAGACATTCTCGGTTTTACCTCCATGCGAAGCACTTGTTTATTATTCGTATTTGAGCCATTAAAAGATGCAGAATAACTTGAAATCGAAGCGCAATCTGAAATGTAACTACACGGCCATATACgttcattttctgtcatttattcaccctcaagttgttccaaaccttcaACACAAATGacgacatttaaaaaaaataaaatgctggtagccattgacttccatatatggaatataaatgaaagtcaatgggtacCATCAacttcaacagaagaaagaaactcatacaggtttggaacaaattAAAGGTGACCAAATGCTaacaaaactcattttttggtgaactatgcccatcattaatttataaatgatcCTTTTTCTAcaagtacttttaaaaaaa

Function

symbol description
sel1l3 Located in nucleoplasm.

NR:

description
PREDICTED: protein sel-1 homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258187.1 True 4051 mRNA 0.47 23 20439195 20448086

Neighbor

gene id symbol gene type direction distance location
stim1a stim1a,stim1,LOC107745192,LOC107686510,LOC107570037,LOC107675872,LOC108432992,LOC108277929 coding upstream 369 20405710 ~ 20438826 (+)
LOC122358498 LOC107735540 coding upstream 82570 20353829 ~ 20356625 (+)
LOC122358440 NA coding upstream 92887 20337546 ~ 20346308 (+)
LOC122359506 NA coding upstream 104200 20317546 ~ 20334995 (+)
LOC122358794 lin37,LOC107745239,LOC107675874,LOC107747665,LOC107585799,LOC107701558 coding upstream 172007 20261727 ~ 20267188 (+)
robo2 robo2,LOC107741616,LOC107745189 coding downstream 13058 20461144 ~ 20827915 (+)
cab39 cab39,LOC107698862,LOC107585731,LOC107559190,LOC107695174 coding downstream 744965 21193051 ~ 21201218 (+)
itm2ca itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866 coding downstream 754763 21202849 ~ 21210105 (+)
ngef ngef,LOC107585734,LOC107745214 coding downstream 778066 21226152 ~ 21251420 (+)
trnai-aau_69 NA coding downstream 804656 21252742 ~ 21252815 (+)
LOC122359467 NA non-coding upstream 86811 20351597 ~ 20352384 (+)
G108337 NA non-coding upstream 117249 20320881 ~ 20321946 (+)
G108256 hsc70,LOC107745199,LOC107675864,LOC107585770,LOC108441346,LOC108241987 non-coding upstream 136986 20297388 ~ 20302209 (+)
G108257 NA non-coding upstream 144239 20239367 ~ 20294956 (+)
G108240 NA non-coding upstream 206010 20170769 ~ 20233185 (+)
LOC122359263 NA non-coding downstream 385408 20833494 ~ 20838578 (+)
G108394 NA non-coding downstream 400636 20848722 ~ 20849915 (+)
G108418 LOC107086176 non-coding downstream 623995 21072081 ~ 21190373 (+)
G108427 NA non-coding downstream 753301 21201387 ~ 21202509 (+)
G108553 NA non-coding downstream 1168570 21616656 ~ 21617193 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 184924 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 189223 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 223716 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 664810 19721284 ~ 19774385 (+)
LOC122358990 LOC107586958,LOC107704764,LOC107752630 other upstream 1443204 18993345 ~ 18995991 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other downstream 763724 21211810 ~ 21214493 (+)
LOC122358705 NA other downstream 1276318 21724404 ~ 21726266 (+)
G108571 NA other downstream 1283895 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 1286928 21735014 ~ 21735718 (+)
G108573 NA other downstream 1288594 21736680 ~ 21737687 (+)

Expression


Co-expression Network