efhd1 (efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379)


Basic Information

Item Value
gene id efhd1
gene name efhd1,LOC107585735,LOC107741634,LOC107698858,LOC107669899,LOC107564379
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 21255183 ~ 21263444 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043258192.1
GAGACCGGTGTTCAGAAACAGCTGATCGTGCGCGGCAGAGCATCTCAGTCCGCAATGTCATCCGAAGAGCTCGCACGGAAGATGCAGCGCGGGCTGGACGCCGAGCAGCGTGACCCCAAACCCGGCTCACCGGAGCAGACAGAACCGCCGCCTCCGGAGAAACCCAGCACGGCTTCCGTGAACGGCGACGCCAGCTCTGAACTGACGGAGAAACTCAACCGCAGACTGGACATCCATGACGGCACGGCGAAACCCAAGCAGATGAAGGTGTTCAACCCCTACACCGAGTTTAAAGAGTTCTCGCGCAAACAGATCAAAGACATGGAGAAAATGTTCAAGAGATTTGACTCTGGCAAAGACGGCTTCATTGATCTGATGGAGCTGAAGCTGATGATGGAGAAGCTCGGAGCTCCACAGACTCATCTAGGCTTGAAGGACATGATCAAGGAGGTGGATGAAGATTATGACGGAAAACTCAGTTACAGAGAGTTCCTGCTGATCTTCCGGAGGGCCGCCGCAGGTGAGCTTCAGGAAGAGAGCGGCCTGATGGCTCTGGCTCGACTCTCAGAGATCGACGTCTCCACCGAAGGCGTTCTCGGAGCCAGGGATTTCTTTGAGGCAAAGGTTCAGGCTCTGTCTGTGCGCAGTAAGTTTGAAGCAGAGATACGAGAAGAacaagaagagaagaagaggatgGAGCTGGAAAGGAAACAACGGCGTGCTGCGTTTAAAGAGCTGCAGTCTACGTTCTGCTCCTAAAGCCAGTTCAGCAGCTCTGTACCTTTTAGAAAACACAGTTTActtgcacgcacacacacattgcttCTCAAACCTCACACGTATGTGTAATCAAACCCGCAGCTCAACACTGAACAAGTAGCATTAGCGTTATTAGCCACTTACAGCTAAAAGATGCATGAGGATTTAGTTTGGCGGGTGACGGCTGTGGAGAAGACGAGATGACGCGAGTGAAATTTCAGGAGGCTTCTAATGTAGGACTTAAAGCCTGATAGACTAGATTGTGCTTCTATTTTAATCTAAGCagctatatatttttagaaacaacTACGTTTATTGTAAAGTTATTCAGTGTTAATCGTAAATTTAAATACGTGTAAGGTTGGTGTCGTGGACTAAATATTGATTATGACCAACTGAGAGAAAACAAACCATGGAAACGGTGggtcaagaaatattttattttttatagattaaAGTCATGCATCGTGttccgttttctttttttgttaacttttttttctacatatttgctaaatattgttgttaattttagtttcattgtATTTAATCAGATGTTCTTAAAATCTGCTTGTAACTCTAGTGTTTTGCCAATTGCATAAAGTCCATTAAATCactgtatttttcaaaaaata

Function

symbol description
efhd1 Predicted to enable calcium ion binding activity. Orthologous to human EFHD1 (EF-hand domain family member D1).

NR:

description
EF-hand domain-containing protein D1-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23921 EFHD1; EF-hand domain-containing family member D1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043258192.1 True 1394 mRNA 0.45 4 21255183 21263444

Neighbor

gene id symbol gene type direction distance location
trnag-ucc_4 NA coding upstream 178 21254934 ~ 21255005 (+)
trnaw-cca_2 NA coding upstream 1635 21253477 ~ 21253548 (+)
trnai-aau_69 NA coding upstream 2368 21252742 ~ 21252815 (+)
ngef ngef,LOC107585734,LOC107745214 coding upstream 3763 21226152 ~ 21251420 (+)
itm2ca itm2ca,LOC107559189,LOC107695173,LOC107585732,LOC107745185,LOC107698866 coding upstream 45078 21202849 ~ 21210105 (+)
gal3st2 LOC107698869,LOC107745180,LOC107585737,LOC107564367 coding downstream 21943 21285387 ~ 21295902 (+)
fat3a fat3,fat3a,LOC107564369,LOC107705473,LOC107585783,LOC107698854,LOC107745210 coding downstream 156639 21420083 ~ 21554540 (+)
mtnr1ba mtnr1ba,LOC107745177,LOC107585812,LOC107669925,LOC107705472,LOC108413652 coding downstream 303801 21567245 ~ 21582907 (+)
LOC122358927 NA coding downstream 451757 21715201 ~ 21723980 (+)
LOC122358818 si:ch211-276c2.2,LOC107698872,LOC107585786,LOC107669856,LOC107739921,LOC108278112,LOC108440474 coding downstream 528162 21791606 ~ 21833216 (+)
G108427 NA non-coding upstream 52674 21201387 ~ 21202509 (+)
G108418 LOC107086176 non-coding upstream 64810 21072081 ~ 21190373 (+)
G108394 NA non-coding upstream 405268 20848722 ~ 20849915 (+)
LOC122359263 NA non-coding upstream 416605 20833494 ~ 20838578 (+)
LOC122359467 NA non-coding upstream 902799 20351597 ~ 20352384 (+)
G108553 NA non-coding downstream 353212 21616656 ~ 21617193 (+)
G108555 NA non-coding downstream 367885 21631329 ~ 21908852 (+)
G108560 LOC107585784,LOC107745209,LOC107698870,LOC107564370,LOC107705471 non-coding downstream 370757 21634201 ~ 21911355 (+)
G108561 NA non-coding downstream 379139 21642583 ~ 21920410 (+)
G108569 LOC107573028,LOC107705465,LOC107697810,LOC107685875,LOC107564371,LOC107566573,LOC107585758,LOC107669894,LOC107573797 non-coding downstream 463616 21727060 ~ 21727570 (+)
G108431 LOC107698865,LOC107576883,LOC107559186,LOC107741632 other upstream 40690 21211810 ~ 21214493 (+)
G108230 hspb6,LOC107675875,LOC107745202,LOC107571389,LOC107701566,LOC107747664 other upstream 1000912 20189033 ~ 20254271 (+)
G108245 psenen,LOC107745203,LOC107675859,LOC107585723,LOC107701557 other upstream 1005211 20184120 ~ 20249972 (+)
LOC122359185 LOC107742015,LOC107699248 other upstream 1039704 20208170 ~ 20215479 (+)
si:dkey-262k9.2 LOC107694804,LOC107739770,LOC107755381,LOC107704708,LOC107585797,LOC107694807,LOC107582218 other upstream 1480798 19721284 ~ 19774385 (+)
LOC122358705 NA other downstream 460960 21724404 ~ 21726266 (+)
G108571 NA other downstream 468537 21731981 ~ 21733107 (+)
G108572 LOC107745176,LOC107698871 other downstream 471570 21735014 ~ 21735718 (+)
G108573 NA other downstream 473236 21736680 ~ 21737687 (+)
G108951 LOC107560855,LOC107670124,LOC107731823,LOC107558828,LOC107669926,LOC107706052 other downstream 1512205 22775649 ~ 22777725 (+)

Expression


Co-expression Network